Re: BioC package "tximport" not found by dh-r's prepare... script - any idea?
Hi Steffen,
On Mon, Aug 05, 2019 at 08:35:17PM +0200, Steffen Möller wrote:
> It is https://bioconductor.org/packages/release/bioc/html/tximport.html
> that I am after. Any idea how to get it found?
Hmmm tricky. When using
d/watch:
version=4
opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? https://www.bioconductor.org/packages/release/bioc/html/tximport.html .*/tximport@ANY_VERSION@@ARCHIVE_EXT@
and d/changelog:
r-bioc-tximport (0.0-1) UNRELEASED; urgency=medium
* Initial release
-- Andreas Tille <tille@debian.org> Mon, 05 Aug 2019 21:12:04 +0200
and running uscan I'm ending up with
uscan --verbose --force-download
...
uscan: Newest version of r-bioc-tximport on remote site is 1.12.3, local version is 0.0
uscan: => Newer package available from
http:https://www.bioconductor.org/www.bioconductor.org/packages/release/bioc/src/contrib/tximport_1.12.3.tar.gz
uscan info: Downloading upstream package: tximport_1.12.3.tar.gz
uscan info: Requesting URL:
http:https://www.bioconductor.org/www.bioconductor.org/packages/release/bioc/src/contrib/tximport_1.12.3.tar.gz
uscan warn: In directory ., downloading
http:https://www.bioconductor.org/www.bioconductor.org/packages/release/bioc/src/contrib/tximport_1.12.3.tar.gz failed: 500 No Host option provided
uscan info: Failed to download upstream package: tximport_1.12.3.tar.gz
Also wget fails to download that URL. I have no problem to download the
tarball from firefox.
I have no idea whether this is a temporary issue. If you are in a hurry
you probably need to download the tarball manually, untar it and call
dh-make-R.
Kind regards
Andreas.
--
http://fam-tille.de
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