Re: "Could not perform immediate configuration" with debian-med
Hi Olivier,
I didn't think gbrowse was available for ubuntu yet--thanks for
clarifying (though the next release is not far away).
I doubt if there is an easy path to using debian-med with the current
gmod server, so I'll set about building it from source. Not a big
deal (and I should bug my IT folks about updating the server! :-)
Thanks,
Scott
On Fri, Aug 5, 2011 at 1:27 PM, Olivier Sallou <olivier.sallou@irisa.fr> wrote:
> Hi,
>
> at first, i was wrong, gbrowse is not available on Ubuntu. It is in Ubuntu pipe for next version, but not available on current version... Sorry
> If needed on ubuntu we may try to add it to our ubuntu launchpad, work depends on dependencies....
>
> Now, with your present problems, I do not know how update mechanism works vs versions but:
> either it points to v6 and you will update with v6 package which may cause some issues
> either it points to v5 and gbrowse won't be available.
> As issue is with perl dependencies, I cannot say what to do with those....
> testing or unstable shouldn't be the issue (my point was to go to testing which is more stable as package is available there).
>
> Maybe someone on the list could help? I should investigate on debian update mechanisms....
>
> Olivier
>
> ----- Mail original -----
>> De: "Scott Cain" <scott@scottcain.net>
>> À: "Olivier Sallou" <olivier.sallou@irisa.fr>
>> Cc: debian-med@lists.debian.org
>> Envoyé: Vendredi 5 Août 2011 19:02:48
>> Objet: Re: "Could not perform immediate configuration" with debian-med
>> Hi Olivier,
>>
>> I'm using Debian 5.0.8 because that is what's running gmod.org,
>> because that's what the IT folks gave me. I plan on getting back to
>> ubuntu soon.
>>
>> If I take out unstable and re-update and try again, I get the same
>> thing. Is this likely to be fixable, or should I just go back to
>> installing from source? When you say that my "deb configuration
>> points to a 6.x repository", do you mean that the line I added for
>> testing is for debian 6, and there is not a corresponding one for
>> debian 5? That sounds like a showstopper for this server.
>>
>> Thanks,
>> Scott
>>
>>
>> On Fri, Aug 5, 2011 at 12:52 PM, Olivier Sallou
>> <olivier.sallou@irisa.fr> wrote:
>> > Hi Scott,
>> > using testing should be enough, latest version of gbrowse has been
>> > moved to
>> > testing.
>> > Still regarding gbrowse, main is enough.
>> >
>> > Furthermore, version 2.38~dfsg-1 is also available on Ubuntu, why
>> > did you
>> > go to Debian ? (this is nice, but if it for GBrowse only , this is
>> > not
>> > necessary)
>> >
>> > Current version of Debian is 6.x (stable and others), maybe some
>> > perl
>> > packages are failing on this version.
>> > your deb configuration points to a 6.x repository.
>> >
>> > Regards
>> >
>> > Olivier
>> >
>> > Le 8/5/11 6:24 PM, Scott Cain a écrit :
>> >
>> > All I did was add these two lines to my sour
>> >
>> > --
>> > Olivier Sallou
>> > IRISA / University of Rennes 1
>> > Campus de Beaulieu, 35000 RENNES - FRANCE
>> > Tel: 02.99.84.71.95
>> >
>> > gpg key id: 4096R/326D8438 (pgp.mit.edu)
>> > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
>> >
>> >
>>
>>
>>
>> --
>> ------------------------------------------------------------------------
>> Scott Cain, Ph. D. scott at scottcain dot net
>> GMOD Coordinator (http://gmod.org/) 216-392-3087
>> Ontario Institute for Cancer Research
>
--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
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