Re: "Could not perform immediate configuration" with debian-med
Hi,
at first, i was wrong, gbrowse is not available on Ubuntu. It is in Ubuntu pipe for next version, but not available on current version... Sorry
If needed on ubuntu we may try to add it to our ubuntu launchpad, work depends on dependencies....
Now, with your present problems, I do not know how update mechanism works vs versions but:
either it points to v6 and you will update with v6 package which may cause some issues
either it points to v5 and gbrowse won't be available.
As issue is with perl dependencies, I cannot say what to do with those....
testing or unstable shouldn't be the issue (my point was to go to testing which is more stable as package is available there).
Maybe someone on the list could help? I should investigate on debian update mechanisms....
Olivier
----- Mail original -----
> De: "Scott Cain" <scott@scottcain.net>
> À: "Olivier Sallou" <olivier.sallou@irisa.fr>
> Cc: debian-med@lists.debian.org
> Envoyé: Vendredi 5 Août 2011 19:02:48
> Objet: Re: "Could not perform immediate configuration" with debian-med
> Hi Olivier,
>
> I'm using Debian 5.0.8 because that is what's running gmod.org,
> because that's what the IT folks gave me. I plan on getting back to
> ubuntu soon.
>
> If I take out unstable and re-update and try again, I get the same
> thing. Is this likely to be fixable, or should I just go back to
> installing from source? When you say that my "deb configuration
> points to a 6.x repository", do you mean that the line I added for
> testing is for debian 6, and there is not a corresponding one for
> debian 5? That sounds like a showstopper for this server.
>
> Thanks,
> Scott
>
>
> On Fri, Aug 5, 2011 at 12:52 PM, Olivier Sallou
> <olivier.sallou@irisa.fr> wrote:
> > Hi Scott,
> > using testing should be enough, latest version of gbrowse has been
> > moved to
> > testing.
> > Still regarding gbrowse, main is enough.
> >
> > Furthermore, version 2.38~dfsg-1 is also available on Ubuntu, why
> > did you
> > go to Debian ? (this is nice, but if it for GBrowse only , this is
> > not
> > necessary)
> >
> > Current version of Debian is 6.x (stable and others), maybe some
> > perl
> > packages are failing on this version.
> > your deb configuration points to a 6.x repository.
> >
> > Regards
> >
> > Olivier
> >
> > Le 8/5/11 6:24 PM, Scott Cain a écrit :
> >
> > All I did was add these two lines to my sour
> >
> > --
> > Olivier Sallou
> > IRISA / University of Rennes 1
> > Campus de Beaulieu, 35000 RENNES - FRANCE
> > Tel: 02.99.84.71.95
> >
> > gpg key id: 4096R/326D8438 (pgp.mit.edu)
> > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
> >
> >
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D. scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/) 216-392-3087
> Ontario Institute for Cancer Research
Reply to: