Fwd: Bug#614382: ITP: transtermhp , needs review .

[Alex Mestiashvili <alexander.mestiashvili@biotec.tu-dresden.de>]

Please review it .
Looks good for me .
Thank you .
Alex




Package: wnpp
Owner: Alex Mestiashvili<alex@biotec.tu-dresden.de>
Severity: wishlist

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* Package name    : transtermhp
  Version         : 2.0.7
  Upstream Author : Carl Kingsford
* URL             : http://transterm.cbcb.umd.edu/
* License         : GPL
  Programming Lang: C++
  Description     : Finds rho-independent transcription terminators in
bacterial genomes.
 TransTermHP finds rho-independent transcription terminators in
 bacterial genomes. Each terminator found by the program is assigned a
 confidence value that estimates its probability of being a true
 terminator. TransTermHP is described in:
 .
 C. Kingsford, K. Ayanbule and S.L. Salzberg. Rapid, accurate,
 computational discovery of Rho-independent transcription terminators
 illuminates their relationship to DNA uptake. Genome Biology 8:R22
 (2007).
 .
 A predecessor system, TransTerm, that used very different search and
 scoring algorithms is described in:
 .
 Maria D. Ermolaeva, Hanif G. Khalak, Owen White, Hamilton O. Smith and
 Steven L. Salzberg. Prediction of Transcription Terminators in Bacterial
 Genomes. J Mol Biol 301, (1), 27-33 (2000)