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Bug#1114459: marked as done (pmix breaks slurm-wlm autopkgtest: causes test to time out)

Your message dated Wed, 17 Sep 2025 14:53:16 +0000
with message-id <E1uytX2-0064hs-20@fasolo.debian.org>
and subject line Bug#1114459: fixed in pmix 6.0.0+really5.0.8-1
has caused the Debian Bug report #1114459,
regarding pmix breaks slurm-wlm autopkgtest: causes test to time out
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1114459: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1114459
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Source: pmix, slurm-wlm
Control: found -1 pmix/6.0.0-3
Control: found -1 slurm-wlm/24.11.5-4
Severity: serious
Tags: sid trixie
User: debian-ci@lists.debian.org
Usertags: breaks needs-update

Dear maintainer(s),
With a recent upload of pmix the autopkgtest of slurm-wlm fails in testing when that autopkgtest is run with the binary packages of pmix from unstable. It times out after 2:47h, where normally it only takes minutes. It passes when run with only packages from testing. In tabular form: 

                       pass            fail
pmix                   from testing    6.0.0-3
slurm-wlm              from testing    24.11.5-4
all others             from testing    from testing

I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of pmix to testing [1]. Due to the nature of this issue, I filed this bug report against both packages. Can you please investigate the situation and reassign the bug to the right package? 

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=pmix

https://ci.debian.net/data/autopkgtest/testing/amd64/s/slurm-wlm/64130829/log.gz

383s ● slurmctld.service - Slurm controller daemon
383s Loaded: loaded (/usr/lib/systemd/system/slurmctld.service; enabled; preset: enabled) 383s Active: active (running) since Fri 2025-09-05 03:51:07 UTC; 10s ago 
383s  Invocation: 612aa5cddd6f46faaa0671f23b1f95eb
383s        Docs: man:slurmctld(8)
383s    Main PID: 3312 (slurmctld)
383s       Tasks: 88
383s      Memory: 5.2M (peak: 9M)
383s         CPU: 84ms
383s      CGroup: /system.slice/slurmctld.service
383s              ├─3312 /usr/sbin/slurmctld --systemd
383s              └─3379 "slurmctld: slurmscriptd"
383s 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: No job state file (/var/lib/slurm/slurmctld/job_state.old) to recover 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: error: Could not open reservation state file /var/lib/slurm/slurmctld/resv_state: No such file or directory 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: error: NOTE: Trying backup state save file. Reservations may be lost 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: No reservation state file (/var/lib/slurm/slurmctld/resv_state.old) to recover 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: error: Could not open trigger state file /var/lib/slurm/slurmctld/trigger_state: No such file or directory 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: error: NOTE: Trying backup state save file. Triggers may be lost! 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: No trigger state file (/var/lib/slurm/slurmctld/trigger_state.old) to recover 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: read_slurm_conf: backup_controller not specified 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: Reinitializing job accounting state 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmctld[3312]: slurmctld: Running as primary controller 
383s ● slurmd.service - Slurm node daemon
383s Loaded: loaded (/usr/lib/systemd/system/slurmd.service; enabled; preset: enabled) 383s Active: active (running) since Fri 2025-09-05 03:51:07 UTC; 10s ago 
383s  Invocation: 91f78f38727e43a1b6b612ea9ff72296
383s        Docs: man:slurmd(8)
383s    Main PID: 3406 (slurmd)
383s       Tasks: 12
383s      Memory: 2.2M (peak: 3.8M)
383s         CPU: 62ms
383s      CGroup: /system.slice/slurmd.service
383s              └─3406 /usr/sbin/slurmd --systemd
383s 383s Sep 05 03:51:07 ci-248-6c8bbe56 systemd[1]: Starting slurmd.service - Slurm node daemon... 383s Sep 05 03:51:07 ci-248-6c8bbe56 (slurmd)[3406]: slurmd.service: Referenced but unset environment variable evaluates to an empty string: SLURMD_OPTIONS 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmd[3406]: slurmd: _read_slurm_cgroup_conf: No cgroup.conf file (/etc/slurm/cgroup.conf), using defaults 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmd[3406]: _read_slurm_cgroup_conf: No cgroup.conf file (/etc/slurm/cgroup.conf), using defaults 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmd[3406]: slurmd: error: Node configuration differs from hardware: CPUs=1:64(hw) Boards=1:1(hw) SocketsPerBoard=1:1(hw) CoresPerSocket=1:32(hw) ThreadsPerCore=1:2(hw) 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmd[3406]: slurmd: CPU frequency setting not configured for this node 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmd[3406]: slurmd: slurmd version 24.11.5 started 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmd[3406]: slurmd: slurmd started on Fri, 05 Sep 2025 03:51:07 +0000 383s Sep 05 03:51:07 ci-248-6c8bbe56 systemd[1]: Started slurmd.service - Slurm node daemon. 383s Sep 05 03:51:07 ci-248-6c8bbe56 slurmd[3406]: slurmd: CPUs=1 Boards=1 Sockets=1 Cores=1 Threads=1 Memory=257333 TmpDisk=256000 Uptime=1279 CPUSpecList=(null) FeaturesAvail=(null) FeaturesActive=(null) 
383s PARTITION AVAIL  TIMELIMIT  NODES  STATE NODELIST
383s test*        up   infinite      1   idle localhost
383s NODELIST NODES PARTITION STATE 383s localhost 1 test* idle 10374s autopkgtest [06:37:48]: ERROR: timed out on command "su -s /bin/bash root -c set -e; exec /tmp/autopkgtest-lxc.a9795u61/downtmp/wrapper.sh --artifacts=/tmp/autopkgtest-lxc.a9795u61/downtmp/mpi-artifacts --chdir=/tmp/autopkgtest-lxc.a9795u61/downtmp/build.CW7/src --env=AUTOPKGTEST_TESTBED_ARCH=amd64 --env=AUTOPKGTEST_TEST_ARCH=amd64 --env=DEB_BUILD_OPTIONS=parallel=64 --env=DEBIAN_FRONTEND=noninteractive --env=LANG=C.UTF-8 --unset-env=LANGUAGE --unset-env=LC_ADDRESS --unset-env=LC_ALL --unset-env=LC_COLLATE --unset-env=LC_CTYPE --unset-env=LC_IDENTIFICATION --unset-env=LC_MEASUREMENT --unset-env=LC_MESSAGES --unset-env=LC_MONETARY --unset-env=LC_NAME --unset-env=LC_NUMERIC --unset-env=LC_PAPER --unset-env=LC_TELEPHONE --unset-env=LC_TIME --script-pid-file=/tmp/autopkgtest_script_pid --source-profile --stderr=/tmp/autopkgtest-lxc.a9795u61/downtmp/mpi-stderr --stdout=/tmp/autopkgtest-lxc.a9795u61/downtmp/mpi-stdout --tmp=/tmp/autopkgtest-lxc.a9795u61/downtmp/autopkgtest_tmp --env=AUTOPKGTEST_NORMAL_USER=debci --env=ADT_NORMAL_USER=debci --make-executable=/tmp/autopkgtest-lxc.a9795u61/downtmp/build.CW7/src/debian/tests/mpi -- /tmp/autopkgtest-lxc.a9795u61/downtmp/build.CW7/src/debian/tests/mpi" (kind: test) 
10374s autopkgtest [06:37:48]: test mpi

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--- End Message ---
--- Begin Message --- 
Source: pmix
Source-Version: 6.0.0+really5.0.8-1
Done: Alastair McKinstry <mckinstry@debian.org>

We believe that the bug you reported is fixed in the latest version of
pmix, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1114459@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Alastair McKinstry <mckinstry@debian.org> (supplier of updated pmix package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 17 Sep 2025 14:05:27 +0100
Source: pmix
Architecture: source
Version: 6.0.0+really5.0.8-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Alastair McKinstry <mckinstry@debian.org>
Closes: 1114459
Changes:
 pmix (6.0.0+really5.0.8-1) unstable; urgency=medium
 .
   * Revert to 5.0.8 for now. Closes: #1114459
Checksums-Sha1:
 fa0aa764ab2711ed335d77e9ade567d009b2d66a 2611 pmix_6.0.0+really5.0.8-1.dsc
 67be3ce611c2f88652370378b904c31e87ac55b9 1326480 pmix_6.0.0+really5.0.8.orig.tar.xz
 0b9b8bcd14f6645565b4cbe2e88fd479c4845145 26680 pmix_6.0.0+really5.0.8-1.debian.tar.xz
Checksums-Sha256:
 0af8e25534c66262d9c6996fa198aebeeaf49292bec397f182ee93530c970f94 2611 pmix_6.0.0+really5.0.8-1.dsc
 8394227d5c36db6eb88472bace64f1dba9930dc1190dda0c8451a2d239520d36 1326480 pmix_6.0.0+really5.0.8.orig.tar.xz
 978e58edbeca3bb03822deeaeedcd8f8253d1039e54321d15c0adf670c31c783 26680 pmix_6.0.0+really5.0.8-1.debian.tar.xz
Files:
 74019d3e1af7a9ee160f59cfb26888a7 2611 net optional pmix_6.0.0+really5.0.8-1.dsc
 67ff580ec40b2c865c235cd92829706b 1326480 net optional pmix_6.0.0+really5.0.8.orig.tar.xz
 5096f55fcdc3cf8f34b3e0804894702d 26680 net optional pmix_6.0.0+really5.0.8-1.debian.tar.xz

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