Segmentation fault when using gdal_translate to convert HDF/TIFF to netCDF
I'm running Debian Stable (Wheezy). The problem arises after
#Retrieve MODIS file
PROD=MOD13C1
PRODUCT=MOD13C1.005
DATE=2013.05.09
PLATFORM=MOLT
wget -r -l1 -v -nd -nc -c -I "${PLATFORM}/${PRODUCT}/${DATE}/" -A
"${PROD}*.hdf" http://e4ftl01.cr.usgs.gov/$PLATFORM/$PRODUCT/$DATE/
VAR_NAME=EVI
VAR_DESCRIP="CMG 0.05 Deg 16 days EVI"
FILE=(`ls ${PROD}*.hdf`)
#Extract EVI subdataset
TIFF_OUT=$PRODUCT'_'$VAR_NAME'_'$DATE'.tif'
NC_OUT=$PRODUCT'_'$VAR_NAME'_'$DATE'.nc'
DATASET="'"'HDF4_EOS:EOS_GRID:"'${FILE}'":MODIS_Grid_16Day_VI_CMG:'$VAR_DESCRIP"'"
eval gdal_translate -of GTiff -co "COMPRESS=LZW" -co "TILED=YES"
$DATASET $TIFF_OUT
gdal_translate -of netCDF $TIFF_OUT $NC_OUT #or eval gdal_translate
-of netCDF $DATASET $NC_OUT
which results in
Input file size is 7200, 3600
0Segmentation fault
This looks similar to a previously reported problem with an earlier
version, https://lists.debian.org/debian-gis/2011/05/msg00004.html ; I
don't know if that was resolved.
Other diagnostics:
$gdal_translate --version
GDAL 1.9.0, released 2011/12/29
$ldd /usr/bin/gdal_translate
linux-vdso.so.1 => (0x00007fff22dff000)
libgdal.so.1 => /usr/lib/libgdal.so.1 (0x00007f561308c000)
libarmadillo.so.3 => /usr/lib/libarmadillo.so.3 (0x00007f5612e84000)
libproj.so.0 => /usr/lib/libproj.so.0 (0x00007f5612c40000)
libpoppler.so.19 => /usr/lib/x86_64-linux-gnu/libpoppler.so.19
(0x00007f5612812000)
libfreexl.so.1 => /usr/lib/x86_64-linux-gnu/libfreexl.so.1 (0x00007f5612608000)
libgeos_c.so.1 => /usr/lib/libgeos_c.so.1 (0x00007f56123e0000)
libepsilon.so.0 => /usr/lib/libepsilon.so.0 (0x00007f56121c8000)
libodbc.so.1 => /usr/lib/x86_64-linux-gnu/libodbc.so.1 (0x00007f5611f60000)
libodbcinst.so.1 => /usr/lib/x86_64-linux-gnu/libodbcinst.so.1
(0x00007f5611d4d000)
libkmlengine.so.0 => /usr/lib/libkmlengine.so.0 (0x00007f5611aa7000)
libkmldom.so.0 => /usr/lib/libkmldom.so.0 (0x00007f5611712000)
libkmlbase.so.0 => /usr/lib/libkmlbase.so.0 (0x00007f56114ed000)
libkmlconvenience.so.0 => /usr/lib/libkmlconvenience.so.0 (0x00007f561129c000)
libminizip.so.0 => /usr/lib/libminizip.so.0 (0x00007f5611093000)
liburiparser.so.1 => /usr/lib/liburiparser.so.1 (0x00007f5610e78000)
libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007f5610c4e000)
libxerces-c.so.28 => /usr/lib/libxerces-c.so.28 (0x00007f5610674000)
libjasper.so.1 => /usr/lib/x86_64-linux-gnu/libjasper.so.1 (0x00007f5610418000)
libnetcdf.so.7 => /usr/lib/libnetcdf.so.7 (0x00007f56100cf000)
libhdf5.so.7 => /usr/lib/libhdf5.so.7 (0x00007f560fc0e000)
libmfhdfalt.so.0 => /usr/lib/libmfhdfalt.so.0 (0x00007f560f9ea000)
libdfalt.so.0 => /usr/lib/libdfalt.so.0 (0x00007f560f748000)
libogdi.so.3.2 => /usr/lib/libogdi.so.3.2 (0x00007f560f527000)
libgif.so.4 => /usr/lib/libgif.so.4 (0x00007f560f31d000)
libjpeg.so.8 => /usr/lib/x86_64-linux-gnu/libjpeg.so.8 (0x00007f560f0e3000)
libpng12.so.0 => /lib/x86_64-linux-gnu/libpng12.so.0 (0x00007f560eebc000)
libpq.so.5 => /usr/lib/libpq.so.5 (0x00007f560ec8e000)
liblzma.so.5 => /lib/x86_64-linux-gnu/liblzma.so.5 (0x00007f560ea6b000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f560e854000)
libdapclient.so.3 => /usr/lib/x86_64-linux-gnu/libdapclient.so.3
(0x00007f560e61d000)
libdapserver.so.7 => /usr/lib/x86_64-linux-gnu/libdapserver.so.7
(0x00007f560e40d000)
libdap.so.11 => /usr/lib/x86_64-linux-gnu/libdap.so.11 (0x00007f560e125000)
libspatialite.so.3 => /usr/lib/libspatialite.so.3 (0x00007f560dc0b000)
libsqlite3.so.0 => /usr/lib/x86_64-linux-gnu/libsqlite3.so.0
(0x00007f560d960000)
libcurl-gnutls.so.4 => /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so.4
(0x00007f560d6fc000)
libmysqlclient.so.18 => /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18
(0x00007f560d1b3000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f560cf97000)
librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007f560cd8f000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f560cb8a000)
libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f560c883000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f560c601000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f560c3ea000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f560c05f000)
libblas.so.3 => /usr/lib/libblas.so.3 (0x00007f560bdbe000)
liblapack.so.3 => /usr/lib/liblapack.so.3 (0x00007f560b1ed000)
liblcms.so.1 => /usr/lib/x86_64-linux-gnu/liblcms.so.1 (0x00007f560afb3000)
libtiff.so.4 => /usr/lib/x86_64-linux-gnu/libtiff.so.4 (0x00007f560ad4c000)
libopenjpeg.so.2 => /usr/lib/x86_64-linux-gnu/libopenjpeg.so.2
(0x00007f560ab2a000)
libfreetype.so.6 => /usr/lib/x86_64-linux-gnu/libfreetype.so.6
(0x00007f560a88b000)
libfontconfig.so.1 => /usr/lib/x86_64-linux-gnu/libfontconfig.so.1
(0x00007f560a653000)
libgeos-3.3.3.so => /usr/lib/libgeos-3.3.3.so (0x00007f560a2c1000)
libpopt.so.0 => /lib/x86_64-linux-gnu/libpopt.so.0 (0x00007f560a0b4000)
libltdl.so.7 => /usr/lib/x86_64-linux-gnu/libltdl.so.7 (0x00007f5609eaa000)
libicuuc.so.48 => /usr/lib/x86_64-linux-gnu/libicuuc.so.48 (0x00007f5609d39000)
libicudata.so.48 => /usr/lib/x86_64-linux-gnu/libicudata.so.48
(0x00007f5608bc7000)
libhdf5_hl.so.7 => /usr/lib/libhdf5_hl.so.7 (0x00007f5608999000)
libssl.so.1.0.0 => /usr/lib/x86_64-linux-gnu/libssl.so.1.0.0
(0x00007f5608738000)
libcrypto.so.1.0.0 => /usr/lib/x86_64-linux-gnu/libcrypto.so.1.0.0
(0x00007f5608340000)
libkrb5.so.3 => /usr/lib/x86_64-linux-gnu/libkrb5.so.3 (0x00007f560806c000)
libcom_err.so.2 => /lib/x86_64-linux-gnu/libcom_err.so.2 (0x00007f5607e67000)
libgssapi_krb5.so.2 => /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2
(0x00007f5607c28000)
libldap_r-2.4.so.2 => /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2
(0x00007f56079d7000)
libuuid.so.1 => /lib/x86_64-linux-gnu/libuuid.so.1 (0x00007f56077d1000)
libxml2.so.2 => /usr/lib/x86_64-linux-gnu/libxml2.so.2 (0x00007f5607471000)
libidn.so.11 => /usr/lib/x86_64-linux-gnu/libidn.so.11 (0x00007f560723c000)
libssh2.so.1 => /usr/lib/x86_64-linux-gnu/libssh2.so.1 (0x00007f5607013000)
liblber-2.4.so.2 => /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2
(0x00007f5606e04000)
libgnutls.so.26 => /usr/lib/x86_64-linux-gnu/libgnutls.so.26
(0x00007f5606b43000)
libgcrypt.so.11 => /lib/x86_64-linux-gnu/libgcrypt.so.11 (0x00007f56068c5000)
librtmp.so.0 => /usr/lib/x86_64-linux-gnu/librtmp.so.0 (0x00007f56066ab000)
/lib64/ld-linux-x86-64.so.2 (0x00007f5613da5000)
libgfortran.so.3 => /usr/lib/x86_64-linux-gnu/libgfortran.so.3
(0x00007f5606394000)
libquadmath.so.0 => /usr/lib/x86_64-linux-gnu/libquadmath.so.0
(0x00007f560615f000)
libjbig.so.0 => /usr/lib/x86_64-linux-gnu/libjbig.so.0 (0x00007f5605f50000)
libk5crypto.so.3 => /usr/lib/x86_64-linux-gnu/libk5crypto.so.3
(0x00007f5605d27000)
libkrb5support.so.0 => /usr/lib/x86_64-linux-gnu/libkrb5support.so.0
(0x00007f5605b1d000)
libkeyutils.so.1 => /lib/x86_64-linux-gnu/libkeyutils.so.1 (0x00007f5605919000)
libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007f5605703000)
libsasl2.so.2 => /usr/lib/x86_64-linux-gnu/libsasl2.so.2 (0x00007f56054e7000)
libtasn1.so.3 => /usr/lib/x86_64-linux-gnu/libtasn1.so.3 (0x00007f56052d6000)
libp11-kit.so.0 => /usr/lib/x86_64-linux-gnu/libp11-kit.so.0
(0x00007f56050c3000)
libgpg-error.so.0 => /lib/x86_64-linux-gnu/libgpg-error.so.0
(0x00007f5604ec0000)
Reply to: