Bug#907690: ITP: elph -- DNA/protein sequence motif finder
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <moeller@debian.org>
* Package name : elph
Version : 1.0.1
* URL : http://www.cbcb.umd.edu/software/ELPH/
* License : Artistic
Programming Lang: C++
Description : DNA/protein sequence motif finder
ELPH (Estimated Locations of Pattern Hits) is a general-purpose
Gibbs sampler for finding motifs in a set of DNA or protein sequences.
The program takes as input a set containing anywhere from a few dozen to
thousands of sequences, and searches through them for the most common
motif, assuming that each sequence contains one copy of the motif. We
have used ELPH to find patterns such as ribosome binding sites (RBSs)
and exon splicing enhancers (ESEs).
The package is team maintained and due to appear on
https://salsa.debian.org/med-team/elph.
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