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Bug#843891: general: mySQL update killed akonadi configuration and leaves Kmail and KOrganizer and Adressbook unusable

Package: general
Severity: important

Dear Maintainer,

the mySQL update killed the akonadi configuration and leaves Kmail and
KOrganizer and Adressbook unusable.

i report this to general, for the simple fact, that someone should have checked
in general that this update does not kill importat work related computers PIM
capabilities. I now have no email and my kalendar wich not only contains my
apointments but my journal and my todo list is also blocked.

here is the console output of akonadi failing to start:

Starting Akonadi Server...
   done.
Connecting to deprecated signal
QDBusConnectionInterface::serviceOwnerChanged(QString,QString,QString)
rouven@BLACKBEAUTY:~$ search paths:  ("/usr/local/bin", "/usr/bin", "/bin",
"/usr/local/games", "/usr/games", "/usr/sbin", "/usr/local/sbin",
"/usr/local/libexec", "/usr/libexec", "/opt/mysql/libexec",
"/opt/local/lib/mysql5/bin", "/opt/mysql/sbin")
Found mysql_install_db:  "/usr/bin/mysql_install_db"
Found mysqlcheck:  ""
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld"
arguments: ("--defaults-file=/home/rouven/.local/share/akonadi/mysql.conf", "--
datadir=/home/rouven/.local/share/akonadi/db_data/", "--socket=/tmp/akonadi-
rouven.nhrlME/mysql.socket")
stdout: ""
stderr: "/usr/sbin/mysqld: Error on realpath() on '/var/lib/mysql-files' (Error
2)
161110 14:24:55 [ERROR] Failed to access directory for --secure-file-priv.
Please make sure that directory exists and is accessible by MySQL Server.
Supplied value : /var/lib/mysql-files
161110 14:24:55 [ERROR] Aborting

"
exit code: 1
process error: "Unknown error"
"[
0: akonadiserver() [0x418c9a]
1: akonadiserver() [0x418f14]
2: /lib/x86_64-linux-gnu/libc.so.6(+0x350e0) [0x7fdab6c9d0e0]
3: /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37) [0x7fdab6c9d067]
4: /lib/x86_64-linux-gnu/libc.so.6(abort+0x148) [0x7fdab6c9e448]
5: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x12a) [0x7fdab84a7a9a]
6: akonadiserver() [0x41ad1d]
7: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8a)
[0x7fdab854723a]
8: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(+0x120855) [0x7fdab8556855]
9: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x31)
[0x7fdab855f1b1]
10: akonadiserver() [0x481eee]
11: akonadiserver() [0x41b91f]
12: akonadiserver() [0x41e008]
13: akonadiserver() [0x4e29e9]
14: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN7QObject5eventEP6QEvent+0x1e1)
[0x7fdab85d5e11]
15: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN16QCoreApplication14notifyInternalEP7QObjectP6QEvent+0x8d)
[0x7fdab85bc71d]
16: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN23QCoreApplicationPrivate16sendPostedEventsEP7QObjectiP11QThreadData+0x231)
[0x7fdab85bffc1]
17: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(+0x1b5bd3) [0x7fdab85ebbd3]
18: /lib/x86_64-linux-gnu/libglib-2.0.so.0(g_main_context_dispatch+0x24d)
[0x7fdab6366c5d]
19: /lib/x86_64-linux-gnu/libglib-2.0.so.0(+0x49f48) [0x7fdab6366f48]
20: /lib/x86_64-linux-gnu/libglib-2.0.so.0(g_main_context_iteration+0x2c)
[0x7fdab6366ffc]
21: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN20QEventDispatcherGlib13processEventsE6QFlagsIN10QEventLoop17ProcessEventsFlagEE+0x5d)
[0x7fdab85ebd1d]
22: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN10QEventLoop13processEventsE6QFlagsINS_17ProcessEventsFlagEE+0x41)
[0x7fdab85bb271]
23: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN10QEventLoop4execE6QFlagsINS_17ProcessEventsFlagEE+0x1a5)
[0x7fdab85bb5d5]
24: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN16QCoreApplication4execEv+0x99)
[0x7fdab85c1059]
25: akonadiserver() [0x4131c5]
26: /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7fdab6c89b45]
27: akonadiserver() [0x413bee]
]
"
ProcessControl: Application 'akonadiserver' returned with exit code 255
(Unknown error)
search paths:  ("/usr/local/bin", "/usr/bin", "/bin", "/usr/local/games",
"/usr/games", "/usr/sbin", "/usr/local/sbin", "/usr/local/libexec",
"/usr/libexec", "/opt/mysql/libexec", "/opt/local/lib/mysql5/bin",
"/opt/mysql/sbin")
Found mysql_install_db:  "/usr/bin/mysql_install_db"
Found mysqlcheck:  ""
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld"
arguments: ("--defaults-file=/home/rouven/.local/share/akonadi/mysql.conf", "--
datadir=/home/rouven/.local/share/akonadi/db_data/", "--socket=/tmp/akonadi-
rouven.nhrlME/mysql.socket")
stdout: ""
stderr: "/usr/sbin/mysqld: Error on realpath() on '/var/lib/mysql-files' (Error
2)
161110 14:24:55 [ERROR] Failed to access directory for --secure-file-priv.
Please make sure that directory exists and is accessible by MySQL Server.
Supplied value : /var/lib/mysql-files
161110 14:24:55 [ERROR] Aborting

"
exit code: 1
process error: "Unknown error"
"[
0: akonadiserver() [0x418c9a]
1: akonadiserver() [0x418f14]
2: /lib/x86_64-linux-gnu/libc.so.6(+0x350e0) [0x7fa1ef3890e0]
3: /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37) [0x7fa1ef389067]
4: /lib/x86_64-linux-gnu/libc.so.6(abort+0x148) [0x7fa1ef38a448]
5: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x12a) [0x7fa1f0b93a9a]
6: akonadiserver() [0x41ad1d]
7: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8a)
[0x7fa1f0c3323a]
8: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(+0x120855) [0x7fa1f0c42855]
9: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x31)
[0x7fa1f0c4b1b1]
10: akonadiserver() [0x481eee]
11: akonadiserver() [0x41b91f]
12: akonadiserver() [0x41e008]
13: akonadiserver() [0x4e29e9]
14: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN7QObject5eventEP6QEvent+0x1e1)
[0x7fa1f0cc1e11]
15: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN16QCoreApplication14notifyInternalEP7QObjectP6QEvent+0x8d)
[0x7fa1f0ca871d]
16: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN23QCoreApplicationPrivate16sendPostedEventsEP7QObjectiP11QThreadData+0x231)
[0x7fa1f0cabfc1]
17: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(+0x1b5bd3) [0x7fa1f0cd7bd3]
18: /lib/x86_64-linux-gnu/libglib-2.0.so.0(g_main_context_dispatch+0x24d)
[0x7fa1eea52c5d]
19: /lib/x86_64-linux-gnu/libglib-2.0.so.0(+0x49f48) [0x7fa1eea52f48]
20: /lib/x86_64-linux-gnu/libglib-2.0.so.0(g_main_context_iteration+0x2c)
[0x7fa1eea52ffc]
21: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN20QEventDispatcherGlib13processEventsE6QFlagsIN10QEventLoop17ProcessEventsFlagEE+0x5d)
[0x7fa1f0cd7d1d]
22: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN10QEventLoop13processEventsE6QFlagsINS_17ProcessEventsFlagEE+0x41)
[0x7fa1f0ca7271]
23: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN10QEventLoop4execE6QFlagsINS_17ProcessEventsFlagEE+0x1a5)
[0x7fa1f0ca75d5]
24: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN16QCoreApplication4execEv+0x99)
[0x7fa1f0cad059]
25: akonadiserver() [0x4131c5]
26: /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7fa1ef375b45]
27: akonadiserver() [0x413bee]
]
"
ProcessControl: Application 'akonadiserver' returned with exit code 255
(Unknown error)
search paths:  ("/usr/local/bin", "/usr/bin", "/bin", "/usr/local/games",
"/usr/games", "/usr/sbin", "/usr/local/sbin", "/usr/local/libexec",
"/usr/libexec", "/opt/mysql/libexec", "/opt/local/lib/mysql5/bin",
"/opt/mysql/sbin")
Found mysql_install_db:  "/usr/bin/mysql_install_db"
Found mysqlcheck:  ""
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld"
arguments: ("--defaults-file=/home/rouven/.local/share/akonadi/mysql.conf", "--
datadir=/home/rouven/.local/share/akonadi/db_data/", "--socket=/tmp/akonadi-
rouven.nhrlME/mysql.socket")
stdout: ""
stderr: "/usr/sbin/mysqld: Error on realpath() on '/var/lib/mysql-files' (Error
2)
161110 14:24:55 [ERROR] Failed to access directory for --secure-file-priv.
Please make sure that directory exists and is accessible by MySQL Server.
Supplied value : /var/lib/mysql-files
161110 14:24:55 [ERROR] Aborting

"
exit code: 1
process error: "Unknown error"
"[
0: akonadiserver() [0x418c9a]
1: akonadiserver() [0x418f14]
2: /lib/x86_64-linux-gnu/libc.so.6(+0x350e0) [0x7eff673a60e0]
3: /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37) [0x7eff673a6067]
4: /lib/x86_64-linux-gnu/libc.so.6(abort+0x148) [0x7eff673a7448]
5: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x12a) [0x7eff68bb0a9a]
6: akonadiserver() [0x41ad1d]
7: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8a)
[0x7eff68c5023a]
8: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(+0x120855) [0x7eff68c5f855]
9: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x31)
[0x7eff68c681b1]
10: akonadiserver() [0x481eee]
11: akonadiserver() [0x41b91f]
12: akonadiserver() [0x41e008]
13: akonadiserver() [0x4e29e9]
14: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN7QObject5eventEP6QEvent+0x1e1)
[0x7eff68cdee11]
15: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN16QCoreApplication14notifyInternalEP7QObjectP6QEvent+0x8d)
[0x7eff68cc571d]
16: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN23QCoreApplicationPrivate16sendPostedEventsEP7QObjectiP11QThreadData+0x231)
[0x7eff68cc8fc1]
17: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(+0x1b5bd3) [0x7eff68cf4bd3]
18: /lib/x86_64-linux-gnu/libglib-2.0.so.0(g_main_context_dispatch+0x24d)
[0x7eff66a6fc5d]
19: /lib/x86_64-linux-gnu/libglib-2.0.so.0(+0x49f48) [0x7eff66a6ff48]
20: /lib/x86_64-linux-gnu/libglib-2.0.so.0(g_main_context_iteration+0x2c)
[0x7eff66a6fffc]
21: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN20QEventDispatcherGlib13processEventsE6QFlagsIN10QEventLoop17ProcessEventsFlagEE+0x5d)
[0x7eff68cf4d1d]
22: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN10QEventLoop13processEventsE6QFlagsINS_17ProcessEventsFlagEE+0x41)
[0x7eff68cc4271]
23: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN10QEventLoop4execE6QFlagsINS_17ProcessEventsFlagEE+0x1a5)
[0x7eff68cc45d5]
24: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN16QCoreApplication4execEv+0x99)
[0x7eff68cca059]
25: akonadiserver() [0x4131c5]
26: /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7eff67392b45]
27: akonadiserver() [0x413bee]
]
"
ProcessControl: Application 'akonadiserver' returned with exit code 255
(Unknown error)
search paths:  ("/usr/local/bin", "/usr/bin", "/bin", "/usr/local/games",
"/usr/games", "/usr/sbin", "/usr/local/sbin", "/usr/local/libexec",
"/usr/libexec", "/opt/mysql/libexec", "/opt/local/lib/mysql5/bin",
"/opt/mysql/sbin")
Found mysql_install_db:  "/usr/bin/mysql_install_db"
Found mysqlcheck:  ""
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld"
arguments: ("--defaults-file=/home/rouven/.local/share/akonadi/mysql.conf", "--
datadir=/home/rouven/.local/share/akonadi/db_data/", "--socket=/tmp/akonadi-
rouven.nhrlME/mysql.socket")
stdout: ""
stderr: "/usr/sbin/mysqld: Error on realpath() on '/var/lib/mysql-files' (Error
2)
161110 14:24:55 [ERROR] Failed to access directory for --secure-file-priv.
Please make sure that directory exists and is accessible by MySQL Server.
Supplied value : /var/lib/mysql-files
161110 14:24:55 [ERROR] Aborting

"
exit code: 1
process error: "Unknown error"
"[
0: akonadiserver() [0x418c9a]
1: akonadiserver() [0x418f14]
2: /lib/x86_64-linux-gnu/libc.so.6(+0x350e0) [0x7fcd198400e0]
3: /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37) [0x7fcd19840067]
4: /lib/x86_64-linux-gnu/libc.so.6(abort+0x148) [0x7fcd19841448]
5: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x12a) [0x7fcd1b04aa9a]
6: akonadiserver() [0x41ad1d]
7: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8a)
[0x7fcd1b0ea23a]
8: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(+0x120855) [0x7fcd1b0f9855]
9: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x31)
[0x7fcd1b1021b1]
10: akonadiserver() [0x481eee]
11: akonadiserver() [0x41b91f]
12: akonadiserver() [0x41e008]
13: akonadiserver() [0x4e29e9]
14: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN7QObject5eventEP6QEvent+0x1e1)
[0x7fcd1b178e11]
15: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN16QCoreApplication14notifyInternalEP7QObjectP6QEvent+0x8d)
[0x7fcd1b15f71d]
16: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN23QCoreApplicationPrivate16sendPostedEventsEP7QObjectiP11QThreadData+0x231)
[0x7fcd1b162fc1]
17: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(+0x1b5bd3) [0x7fcd1b18ebd3]
18: /lib/x86_64-linux-gnu/libglib-2.0.so.0(g_main_context_dispatch+0x24d)
[0x7fcd18f09c5d]
19: /lib/x86_64-linux-gnu/libglib-2.0.so.0(+0x49f48) [0x7fcd18f09f48]
20: /lib/x86_64-linux-gnu/libglib-2.0.so.0(g_main_context_iteration+0x2c)
[0x7fcd18f09ffc]
21: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN20QEventDispatcherGlib13processEventsE6QFlagsIN10QEventLoop17ProcessEventsFlagEE+0x5d)
[0x7fcd1b18ed1d]
22: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN10QEventLoop13processEventsE6QFlagsINS_17ProcessEventsFlagEE+0x41)
[0x7fcd1b15e271]
23: /usr/lib/x86_64-linux-
gnu/libQtCore.so.4(_ZN10QEventLoop4execE6QFlagsINS_17ProcessEventsFlagEE+0x1a5)
[0x7fcd1b15e5d5]
24: /usr/lib/x86_64-linux-gnu/libQtCore.so.4(_ZN16QCoreApplication4execEv+0x99)
[0x7fcd1b164059]
25: akonadiserver() [0x4131c5]
26: /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7fcd1982cb45]
27: akonadiserver() [0x413bee]
]
"
ProcessControl: Application 'akonadiserver' returned with exit code 255
(Unknown error)
"akonadiserver" crashed too often and will not be restarted!

:end of the konsole output.

thank you very much for ruining my workday. i wasnt in the mude to do anything
anyway. i guess it will only take about 6 months or so, until someone starts
getting into the mude of starting to think about a fix of this unconcerning
problem.

have a nice day.



-- System Information:
Debian Release: 8.6
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.16.0-4-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
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