Accepted samtools 0.1.19-1~bpo70+1 (source amd64)
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Hash: SHA512
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Date: Wed, 16 Apr 2014 07:29:02 +0900
Source: samtools
Binary: samtools libbam-dev
Architecture: source amd64
Version: 0.1.19-1~bpo70+1
Distribution: wheezy-backports
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description:
libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format
samtools - processing sequence alignments in SAM and BAM formats
Closes: 544976 653042 671524
Changes:
samtools (0.1.19-1~bpo70+1) wheezy-backports; urgency=medium
.
* Backport for Wheezy.
.
samtools (0.1.19-1) unstable; urgency=low
.
cb9bd50 Imported https://github.com/samtools/samtools/archive/0.1.19.tar.gz
1e6d442 new tools ace2sam, bamcheck, plot-bamcheck, r2plot.lua, vcfutils.lua.
2f2d5c5 debian/copyright: collapsed copyright notices from main holders.
e194f9e Removed fix_float_tag.patch, corrected upstream.
9c0e543 Refreshed patches.
3e7e0ec Renamed no-pileup-tests.patch fix_example_makefile.patch.
8d8550e example/Makefile: pass -lpthread when compiling calDepth.
fc32243 harden by concatenating Debian's LDFLAGS and CPPFLAGS in CFLAGS.
6f75b48 debian/control: normalised with cme.
e13bb5e debian/control: normalised VCS URLs.
a1b1b00 debian/control: deleted DM-Upload-Allowed field.
ddcd54e Use NEWS as upstream changelog.
81ad760 Conforms to Policy version 3.9.4.
.
samtools (0.1.18-4) unstable; urgency=low
.
[Charles Plessy]
* debian/copyright: Normalised with config-model
* added bash completion
* Build-depend on Debhelper 9
* Pass build flaggs set by dpkg-buildflags via Debhelper
* Moved DOI and PubMed to the Reference namespace
* Do not compress the example binary alignment file
* Mention ‘SAMtools’ in libbam-dev's description
.
[Andreas Tille]
* debian/upstream: replaced BibTeX entry
.
[Dominique Belhachemi]
* added patch to fix float tag bug (upstream bug 71)
.
samtools (0.1.18-3) unstable; urgency=low
.
* upload 0.1.18-2 closed the wrong bug, correction:
* added patch to fix segfault in mpileup (Closes: #653042)
* added patch to fix coverage cap (Closes: #671524)
.
samtools (0.1.18-2) unstable; urgency=low
.
* added patch to fix segfault in mpileup (Closes: #544976)
* added patch to fix coverage cap (Closes: #671524)
.
samtools (0.1.18-1) unstable; urgency=low
.
[b990d9d3] New upstream release.
[d59366b9] Updated copyright statements.
[aa08abe5] Compress binary packages with xz.
[9a36c994] Added a DEP 3 header to debian/patches/no-pileup-tests.patch.
Checksums-Sha1:
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9423100d61ea5bbfd9a315d823c95288fe76ffe7 10010 samtools_0.1.19-1~bpo70+1.debian.tar.gz
653cd074ca7302ab3d105837ca96068fa3cc6e04 562434 samtools_0.1.19-1~bpo70+1_amd64.deb
f2ff6a6024af331ff2a7a90d0d24625b04b64c96 122934 libbam-dev_0.1.19-1~bpo70+1_amd64.deb
Checksums-Sha256:
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0c56f1e2967cc4a30cb71c29a93803b2ea0f09251d751df3a0fb39d3b64b6651 10010 samtools_0.1.19-1~bpo70+1.debian.tar.gz
7685cd9618b15c9a0696d3a590711b8178e67ef661baa2af5a3d670b54af394c 562434 samtools_0.1.19-1~bpo70+1_amd64.deb
25bf05daeac487748b74cb098fd7ac537d034da83c7ee0d4b129eae8a088602b 122934 libbam-dev_0.1.19-1~bpo70+1_amd64.deb
Files:
fe2effe3a0571ee5a3c889fe105a0d09 2093 science optional samtools_0.1.19-1~bpo70+1.dsc
5a1a3d7038fd3add3708988ac83865c6 10010 science optional samtools_0.1.19-1~bpo70+1.debian.tar.gz
e93e3ff912789fd1b7f3f08d55286107 562434 science optional samtools_0.1.19-1~bpo70+1_amd64.deb
89895784d92a514241130f48e754a89d 122934 libdevel optional libbam-dev_0.1.19-1~bpo70+1_amd64.deb
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