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Bug#610603: marked as done (ITP: sra-sdk -- utilities for the NCBI Sequence Read Archive)

Your message dated Tue, 24 May 2011 11:18:51 +0000
with message-id <E1QOpdT-00048u-Ak@franck.debian.org>
and subject line Bug#610603: fixed in sra-sdk 2.0.1-1
has caused the Debian Bug report #610603,
regarding ITP: sra-sdk -- utilities for the NCBI Sequence Read Archive
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
610603: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=610603
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

  Package name    : sra-sdk
  Version         : 2.0.0rc1
  Upstream Author : National Center for Biotechnology Information (U. S. A.)
  URL             : http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software
  License         : Public domain (U. S. A. governmental work)
  Programming Lang: C
  Description     : utilities for the NCBI Sequence Read Archive

 Tools for reading the SRA archive, generally by converting individual runs
 into some commonly used format such as fastq. It also includes sources to
 loader tools that are still under test. The intention is to give pre-release
 access to the reader code.
 .
 The textual dumpers "sra-dump" and "vdb-dump" are provided in this
 release as an aid in visual inspection. It is likely that their
 actual output formatting will be changed in the near future to a
 stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON
 THE OUTPUT FORMAT SEEN IN THIS RELEASE.
 .
 The "help" information will be improved in near future releases, and
 the tool options will become standardized across the set. We will
 also be providing documentation on our web site.
 .
 Tool options may change in the next release. Version 1 tool options
 will remain supported wherever possible in order to preserve
 operation of any existing scripts.

I will first upload to experimental until a final release is published.

There will be 3 binary packages: sra-toolkit with the binaries,
sra-toolkit-libs0 with the runtime libraries, and sra-toolkit-libs-dev
for developers.

I understand that having one package per library is ideal, but the
number of different libaries is quite large:

/usr/lib/libwkdb.so.1.1.2
/usr/lib/libkproc.so.1.0.0
/usr/lib/libsra-schema.so.1.0.0
/usr/lib/libvdb.so.2.0.4
/usr/lib/libkq.so.1.0.0
/usr/lib/libksrch.so.1.0.2
/usr/lib/libkfs.so.1.0.2
/usr/lib/libkdb.so.1.1.2
/usr/lib/libwvdb.so.2.0.4
/usr/lib/libksproc.so.1.0.0
/usr/lib/libkfg.so.1.0.0
/usr/lib/libkxml.so.1.0.2
/usr/lib/libwsradb.so.3.0.1
/usr/lib/libklib.so.1.1.0
/usr/lib/libsrareader.so.1.0.0
/usr/lib/libsradb.so.3.0.1

This said, if a more experienced developer would still recommend me to
make one package per library, I will. I checked with upstream and
these libraries are intended for public use (although given that they
are recent, there is no known third-party using them yet).

Have a nice day,

-- 
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan

--- End Message ---
--- Begin Message --- 
Source: sra-sdk
Source-Version: 2.0.1-1

We believe that the bug you reported is fixed in the latest version of
sra-sdk, which is due to be installed in the Debian FTP archive:

sra-sdk_2.0.1-1.debian.tar.gz
  to main/s/sra-sdk/sra-sdk_2.0.1-1.debian.tar.gz
sra-sdk_2.0.1-1.dsc
  to main/s/sra-sdk/sra-sdk_2.0.1-1.dsc
sra-sdk_2.0.1.orig.tar.gz
  to main/s/sra-sdk/sra-sdk_2.0.1.orig.tar.gz
sra-toolkit-libs-dev_2.0.1-1_amd64.deb
  to main/s/sra-sdk/sra-toolkit-libs-dev_2.0.1-1_amd64.deb
sra-toolkit-libs0_2.0.1-1_amd64.deb
  to main/s/sra-sdk/sra-toolkit-libs0_2.0.1-1_amd64.deb
sra-toolkit_2.0.1-1_amd64.deb
  to main/s/sra-sdk/sra-toolkit_2.0.1-1_amd64.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 610603@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated sra-sdk package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Tue, 24 May 2011 14:48:10 +0900
Source: sra-sdk
Binary: sra-toolkit sra-toolkit-libs0 sra-toolkit-libs-dev
Architecture: source amd64
Version: 2.0.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 sra-toolkit - utilities for the NCBI Sequence Read Archive
 sra-toolkit-libs-dev - Development files for the NCBI SRA Toolkit's libraries
 sra-toolkit-libs0 - Libraries for the SRA Toolkit
Closes: 610603
Changes: 
 sra-sdk (2.0.1-1) unstable; urgency=low
 .
   * Initial release (Closes: #610603).
Checksums-Sha1: 
 a6b9763994ca4a57413ffe7a8863d3e8d9d402b1 2063 sra-sdk_2.0.1-1.dsc
 a0326d8a907d95c61d92ede050f96d91b01055ad 1763451 sra-sdk_2.0.1.orig.tar.gz
 728da25ef027dda42e278e223eb077a55014b5b4 17675 sra-sdk_2.0.1-1.debian.tar.gz
 407876cb6f0710a84ef700fe1e77b1b0424be9d2 1037850 sra-toolkit_2.0.1-1_amd64.deb
 2e25294e39142dfcb3e873369d4c4a4c4733b476 748558 sra-toolkit-libs0_2.0.1-1_amd64.deb
 ca89ce1734ad3f48bd45f7e90c1a803c13d4a85c 5986 sra-toolkit-libs-dev_2.0.1-1_amd64.deb
Checksums-Sha256: 
 9f7746be9c8f82da921a38446b6d7dbcd85c435c52f492786206b6262ca97bb7 2063 sra-sdk_2.0.1-1.dsc
 d9f5c47ba6bfc95434273ea37e41fa905c475aaa5ecd995ac0365b675e011e9b 1763451 sra-sdk_2.0.1.orig.tar.gz
 19082f2feefe98d95b7c1549a20e480da90f90442365b1dd3a138b276d6a7568 17675 sra-sdk_2.0.1-1.debian.tar.gz
 d82debd17d016ffe38f1872156d1c60f5c82c2f3102955ae3d72c2d2644714c7 1037850 sra-toolkit_2.0.1-1_amd64.deb
 4d2b65ea116b506eca7dc9dab118ea371884768dd688a0541df571297e813602 748558 sra-toolkit-libs0_2.0.1-1_amd64.deb
 fe9665689571df52cacfadfea80c085445e911542c19518a57d72863fd2ee4df 5986 sra-toolkit-libs-dev_2.0.1-1_amd64.deb
Files: 
 04a471a0ba7fc09ba28be28d7d0faec0 2063 science optional sra-sdk_2.0.1-1.dsc
 d4d161b2fb94940a123fa706e28764fc 1763451 science optional sra-sdk_2.0.1.orig.tar.gz
 7b568fc3fbef8b84885619bb1ad9377e 17675 science optional sra-sdk_2.0.1-1.debian.tar.gz
 6cf3c3aaf0bdbca6670b1b03a6b8524a 1037850 science optional sra-toolkit_2.0.1-1_amd64.deb
 df19658f0bc62b74134ab5e5ca5ce28c 748558 science optional sra-toolkit-libs0_2.0.1-1_amd64.deb
 6241ef38eb695f2dab42a1aab0c73985 5986 science optional sra-toolkit-libs-dev_2.0.1-1_amd64.deb

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--- End Message ---
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