[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#976727: marked as done (ITP: libpdb-redo -- Library containing shared code for the various programs in project PDB-REDO)



Your message dated Sun, 13 Dec 2020 22:00:12 +0000
with message-id <E1koZPY-000HWA-2I@fasolo.debian.org>
and subject line Bug#976727: fixed in libpdb-redo 1.0.0-1
has caused the Debian Bug report #976727,
regarding ITP: libpdb-redo -- Library containing shared code for the various programs in project PDB-REDO
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
976727: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=976727
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: "Maarten L. Hekkelman" <maarten@hekkelman.com>

* Package name    : libpdb-redo
  Version         : 1.0.0
  Upstream Author : Maarten L. Hekkelman <maarten@hekkelman.com>
* URL             : https://github.com/PDB-REDO/libpdb-redo
* License         : BSD-2-Clause
  Programming Lang: C++
  Description     : Library containing shared code for the various programs in project PDB-REDO

For the PDB-REDO project, a lot of programs have been created over time. Many of these application share common routines and these are combined in this particular library. The PDB-REDO tools that are of general interest will follow as separate Debian packages.

About PDB-REDO:

PDB-REDO is a procedure to optimise crystallographic structure models, providing algorithms that make a fully automated decision making system for refinement, rebuilding and validation. It combines popular crystallographic software from CCP4, e.g. REFMAC and COOT, with with our specially developed rebuilding tools Centrifuge, Pepflip & SideAide and structure analysis tools like WHAT IF and PDB-care. PDB-REDO optimises refinement settings (e.g. geometric and B-factor restraint weights, B-factor model, TLS groups, NCS and homology restraints), refines with REFMAC, partially rebuilds the structure (rejects waters, refines side chains, checks peptide planes), refines some more, and then validates the results.

With PDB-REDO you can obtain updated and optimised versions of existing entries of the PDB from our DataBank, or you can optimise your own structure model using our Server. If you want to know more or install PDB-REDO on your own computers, please check below.

--- End Message ---
--- Begin Message ---
Source: libpdb-redo
Source-Version: 1.0.0-1
Done: maarten@hekkelman.com (Maarten L. Hekkelman)

We believe that the bug you reported is fixed in the latest version of
libpdb-redo, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 976727@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Maarten L. Hekkelman <maarten@hekkelman.com> (supplier of updated libpdb-redo package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 07 Dec 2020 10:50:19 +0100
Source: libpdb-redo
Binary: libpdb-redo-dev libpdb-redo1 libpdb-redo1-dbgsym
Architecture: source amd64
Version: 1.0.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Maarten L. Hekkelman <maarten@hekkelman.com>
Description:
 libpdb-redo-dev - Development files for libpdb-redo
 libpdb-redo1 - Library file for libpdb-redo
Closes: 976727
Changes:
 libpdb-redo (1.0.0-1) unstable; urgency=medium
 .
   * Initial release (Closes: #976727)
Checksums-Sha1:
 1cfecb111f3aec8069ae691547d4c7497f6e307e 2251 libpdb-redo_1.0.0-1.dsc
 94d65b688ccfa69d8f65aa15d9d970019e8f2847 4091410 libpdb-redo_1.0.0.orig.tar.gz
 0d62dd207f59cfe67c292ccb8703528e05570546 4120 libpdb-redo_1.0.0-1.debian.tar.xz
 204c343be69241247194560c39dd6f1f58310584 619880 libpdb-redo-dev_1.0.0-1_amd64.deb
 a6da07a4fbcc3395d1650214ae0e6f74960b2e3a 6226768 libpdb-redo1-dbgsym_1.0.0-1_amd64.deb
 2fd31db6ecb534cea3f00028c1edf843e6d0c725 3148764 libpdb-redo1_1.0.0-1_amd64.deb
 9d71a22ff036aaac50e180b32746add505640150 8680 libpdb-redo_1.0.0-1_amd64.buildinfo
Checksums-Sha256:
 017a8c8b6329444f39f01d1d066cb38cc38cb3269286456a63ce186451cced3a 2251 libpdb-redo_1.0.0-1.dsc
 39e77c350afebe81d8ecb7260178b137c62434a07582cdca6d81450848cb613b 4091410 libpdb-redo_1.0.0.orig.tar.gz
 2d4f335c05fbf33f6ca15a818e0703e925a190848346fd7e8dc8e5c66c9c0bd6 4120 libpdb-redo_1.0.0-1.debian.tar.xz
 61825d1a8a533afb742a9eae7bb12755473ca17cb006fb7f4208d25fd6ebc7f5 619880 libpdb-redo-dev_1.0.0-1_amd64.deb
 01bfaacb0f43cef3f9dc3b70192205c1668161447067d6ec955babcd79cffc9a 6226768 libpdb-redo1-dbgsym_1.0.0-1_amd64.deb
 e08e7cac0466cbf5b016aa7c0d6faf7ad7383a19405fd5a8f8b9756c78acabc7 3148764 libpdb-redo1_1.0.0-1_amd64.deb
 a816e25232a498f14fdbc49d9db1642eac07e0443b25162ff98767a96e227fba 8680 libpdb-redo_1.0.0-1_amd64.buildinfo
Files:
 bcc60c658206fa027522951d8a61443f 2251 libs optional libpdb-redo_1.0.0-1.dsc
 e5aaf7cac10454552febc322df24826c 4091410 libs optional libpdb-redo_1.0.0.orig.tar.gz
 fc1a6b607e8cd2718a1469674c1b8cd5 4120 libs optional libpdb-redo_1.0.0-1.debian.tar.xz
 17ed63d768951d4fc805c8f5978561d5 619880 libdevel optional libpdb-redo-dev_1.0.0-1_amd64.deb
 02c429c3dc72795020484df3692982eb 6226768 debug optional libpdb-redo1-dbgsym_1.0.0-1_amd64.deb
 99fcd7ca8af416272f6520f70a6cc32a 3148764 libs optional libpdb-redo1_1.0.0-1_amd64.deb
 c9ca55f9928b5c20644f8f45b8c4fa0d 8680 libs optional libpdb-redo_1.0.0-1_amd64.buildinfo

-----BEGIN PGP SIGNATURE-----
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=/zK7
-----END PGP SIGNATURE-----

--- End Message ---

Reply to: