Bug#931095: marked as done (ITP: r-other-chbutils -- GNU R utilities from Harvard School of Public Health Bioinformatics)
Your message dated Tue, 09 Jul 2019 14:13:12 +0000
with message-id <E1hkqro-0003pt-KF@fasolo.debian.org>
and subject line Bug#931095: fixed in r-other-chbutils 0.1+git20171026.a226cee-1
has caused the Debian Bug report #931095,
regarding ITP: r-other-chbutils -- GNU R utilities from Harvard School of Public Health Bioinformatics
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)
--
931095: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=931095
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: r-other-chbutils -- GNU R utilities from Harvard School of Public Health Bioinformatics
- From: Andreas Tille <tille@debian.org>
- Date: Wed, 26 Jun 2019 09:26:52 +0200
- Message-id: <156153401294.28205.2615868690370167783.reportbug@sputnik.fam-tille.de>
Package: wnpp
Severity: wishlist
Subject: ITP: r-other-chbutils -- GNU R utilities from Harvard School of Public Health Bioinformatics
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist
* Package name : r-other-chbutils
Version : 0.1+git20171026.a226cee
Upstream Author : Harvard School of Public Health Bioinformatics Core
* URL : https://github.com/hbc/CHBUtils
* License : MIT
Programming Lang: GNU R
Description : GNU R utilities from Harvard School of Public Health Bioinformatics
chb_utils-package chb_utils
annotate_df Annotate Dataframe containing Ensembl IDs with Gene
Symbols and Descriptions
boxplotoutliers Cel file IDs of intensity boxplot outlier arrays (in
characters).
chb_utils chb_utils
col2rownames add a column to a dataframe consisting of the
current rownames
convertIDs Get other Ids for genes in the same order
create_report Create report of QC
getTFpairs Get mouse TF-target pairs from opossum database
get_biomart Get biomart annotation from id
ggheatmap generate a heatmap + dendrograms, ggplot2 style
ggheatmap.show Display a ggheatmap
ggplotDispEsts Plot Dispersion Estimates - nicer ggplot version of
DESeq graph
mds Plot MDS
mdsplot.RGset MDS (MultiDimensional Scaling) Plots
nuseoutliers Cel file IDs of intensity NUSE outlier arrays (in
characters).
PCAplot.cds Pairwise Principal Component Analysis Plots of
CountDataSet objects
PCAplot.eset Pairwise Principal Component Analysis Plots
Plots the differntially expressed genes on an MA
plotDE plot, ggplot style If adjusted pvalues are present,
colors those that pass cutoff red
plot_dendro ggplot based dendrogram plot
print_enrichGO Clean and print results from enrichGO
Plots the pvalue quantiles against the uniform
qqplot_JH distribution. If adjusted pvalues are present,
colors those that pass cutoff red
rleoutliers Cel file IDs of intensity RLE outlier arrays (in
characters).
row2colnames add a column to a dataframe consisting of the
current rownames
runGO Run GO using clusterprofiler
variance_by_component Plot PC importance
volcano_density_plot Create volcano plot from log2FC and adjusted pvalues
data frame
write_report Write report of QC
Remark: This package is maintained by Debian R Packages Maintainers at
https://salsa.debian.org/r-pkg-team/r-other-chbutils
--- End Message ---
--- Begin Message ---
- To: 931095-close@bugs.debian.org
- Subject: Bug#931095: fixed in r-other-chbutils 0.1+git20171026.a226cee-1
- From: Andreas Tille <tille@debian.org>
- Date: Tue, 09 Jul 2019 14:13:12 +0000
- Message-id: <E1hkqro-0003pt-KF@fasolo.debian.org>
Source: r-other-chbutils
Source-Version: 0.1+git20171026.a226cee-1
We believe that the bug you reported is fixed in the latest version of
r-other-chbutils, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 931095@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated r-other-chbutils package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 26 Jun 2019 09:43:51 +0200
Source: r-other-chbutils
Binary: r-other-chbutils
Architecture: source amd64
Version: 0.1+git20171026.a226cee-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-other-chbutils - GNU R utilities from Harvard School of Public Health Bioinformati
Closes: 931095
Changes:
r-other-chbutils (0.1+git20171026.a226cee-1) unstable; urgency=medium
.
* Initial release (closes: #931095)
Checksums-Sha1:
55c4373f5bc58d39cd090059d3845a3d6ecb2e13 2182 r-other-chbutils_0.1+git20171026.a226cee-1.dsc
e05214940e86517f1561ec41d2d464fa6df1cebf 21972 r-other-chbutils_0.1+git20171026.a226cee.orig.tar.xz
25b2426b808f40cbef16208565e87fb55876f90c 2468 r-other-chbutils_0.1+git20171026.a226cee-1.debian.tar.xz
26c147dd1f4aaa93b40082e1bf4da1750a49ae89 8511 r-other-chbutils_0.1+git20171026.a226cee-1_amd64.buildinfo
01933f606c07ffb5758850a8c8bac67753f736c8 137230 r-other-chbutils_0.1+git20171026.a226cee-1_amd64.deb
Checksums-Sha256:
b4bc7f05ca645983b28318447b1845d42036271903a50e83af57cd5f611c732a 2182 r-other-chbutils_0.1+git20171026.a226cee-1.dsc
7fbf1543ab8c76a0c99a81bc5a8c207d845510419c3601ade74dd1214b33b886 21972 r-other-chbutils_0.1+git20171026.a226cee.orig.tar.xz
3a0d560a8885b80cb9a63b765e37e9222208a348232084998950001c3b69b22f 2468 r-other-chbutils_0.1+git20171026.a226cee-1.debian.tar.xz
bd5fd7ef78adc8aff51c29243a188e5820c8aae9d08b0514ad2e03082e43e357 8511 r-other-chbutils_0.1+git20171026.a226cee-1_amd64.buildinfo
e2c58749fd00a210225005b004c4a830f57357d3933bd2a548ded87d8b89b55a 137230 r-other-chbutils_0.1+git20171026.a226cee-1_amd64.deb
Files:
ef18b4cbcd0a15a6a947086b48ce722d 2182 gnu-r optional r-other-chbutils_0.1+git20171026.a226cee-1.dsc
56e86860579598fe84a84ef2da6174e6 21972 gnu-r optional r-other-chbutils_0.1+git20171026.a226cee.orig.tar.xz
ac61dbac45e143256071f08ca2c600d3 2468 gnu-r optional r-other-chbutils_0.1+git20171026.a226cee-1.debian.tar.xz
4dc86ba0de492e1be2042d3e2c29074b 8511 gnu-r optional r-other-chbutils_0.1+git20171026.a226cee-1_amd64.buildinfo
9c1e48913306d12cf501cb8056ff5329 137230 gnu-r optional r-other-chbutils_0.1+git20171026.a226cee-1_amd64.deb
-----BEGIN PGP SIGNATURE-----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=y+i6
-----END PGP SIGNATURE-----
--- End Message ---
Reply to: