Bug#960339: marked as done (ITP: adios2 -- Adaptable IO system for simulations)
Your message dated Sat, 11 Nov 2023 13:00:14 +0000
with message-id <E1r1naw-000tdS-9e@fasolo.debian.org>
and subject line Bug#960339: fixed in adios2 2.8.2+dfsg1-1
has caused the Debian Bug report #960339,
regarding ITP: adios2 -- Adaptable IO system for simulations
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
960339: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960339
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Owner: Kyle Edwards <kyle.edwards@kitware.com>
Severity: wishlist
X-Debbugs-CC: debian-science@debian.org
* Package name : adios2
Version : 2.6.0
Upstream Author : Oak Ridge National Laboratory
* URL : https://github.com/ornladios/ADIOS2
* License : Apache
Programming Lang: C++
Description : ADIOS2 Adaptable IO system for simulations
The Adaptable IO System (ADIOS) provides a simple, flexible way for
scientists to describe the data in their code that may need to be
written, read, or processed outside of the running simulation. By
providing an external to the code XML file describing the various
elements, their types, and how you wish to process them this run, the
routines in the host code (either Fortran or C) can transparently
change how they process the data.
Kyle
--- End Message ---
--- Begin Message ---
Source: adios2
Source-Version: 2.8.2+dfsg1-1
Done: Drew Parsons <dparsons@debian.org>
We believe that the bug you reported is fixed in the latest version of
adios2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 960339@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dparsons@debian.org> (supplier of updated adios2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 10 Sep 2023 18:12:44 +0200
Source: adios2
Binary: adios2-data adios2-mpi-bin adios2-mpi-bin-dbgsym adios2-scripts adios2-serial-bin adios2-serial-bin-dbgsym libadios2-common-c++11-dev libadios2-common-c-dev libadios2-common-core-dev libadios2-mpi-auxiliary-2 libadios2-mpi-auxiliary-2-dbgsym libadios2-mpi-auxiliary-dev libadios2-mpi-c++11-2 libadios2-mpi-c++11-2-dbgsym libadios2-mpi-c++11-dev libadios2-mpi-c-2 libadios2-mpi-c-2-dbgsym libadios2-mpi-c-dev libadios2-mpi-core-2 libadios2-mpi-core-2-dbgsym libadios2-mpi-core-dev libadios2-mpi-fortran-2 libadios2-mpi-fortran-2-dbgsym libadios2-mpi-fortran-dev libadios2-serial-auxiliary-2 libadios2-serial-auxiliary-2-dbgsym libadios2-serial-auxiliary-dev libadios2-serial-c++11-2 libadios2-serial-c++11-2-dbgsym libadios2-serial-c++11-dev libadios2-serial-c-2 libadios2-serial-c-2-dbgsym libadios2-serial-c-dev libadios2-serial-core-2 libadios2-serial-core-2-dbgsym libadios2-serial-core-dev libadios2-serial-fortran-2 libadios2-serial-fortran-2-dbgsym
libadios2-serial-fortran-dev python3-adios2 python3-adios2-mpi python3-adios2-mpi-dbgsym python3-adios2-serial
python3-adios2-serial-dbgsym
Architecture: source all amd64
Version: 2.8.2+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Drew Parsons <dparsons@debian.org>
Description:
adios2-data - ADIOS2 Adaptable IO system for simulations - tool data
adios2-mpi-bin - ADIOS2 Adaptable IO system for simulations - binary tools (MPI)
adios2-scripts - ADIOS2 Adaptable IO system for simulations - scripts
adios2-serial-bin - ADIOS2 Adaptable IO system for simulations - binary tools (serial
libadios2-common-c++11-dev - Adaptable IO system for simulations - C++11 binding include files
libadios2-common-c-dev - Adaptable IO system for simulations - C binding include files (co
libadios2-common-core-dev - Adaptable IO system for simulations - core include files (common)
libadios2-mpi-auxiliary-2 - ADIOS2 Adaptable IO system for simulations - auxiliary libraries
libadios2-mpi-auxiliary-dev - Adaptable IO system for simulations - auxiliary development files
libadios2-mpi-c++11-2 - ADIOS2 Adaptable IO system for simulations - C++11 binding librar
libadios2-mpi-c++11-dev - Adaptable IO system for simulations - C++11 binding development f
libadios2-mpi-c-2 - ADIOS2 Adaptable IO system for simulations - C binding libraries
libadios2-mpi-c-dev - Adaptable IO system for simulations - C binding development files
libadios2-mpi-core-2 - ADIOS2 Adaptable IO system for simulations - core libraries (MPI)
libadios2-mpi-core-dev - Adaptable IO system for simulations - core development files (MPI
libadios2-mpi-fortran-2 - ADIOS2 Adaptable IO system for simulations - Fortran binding libr
libadios2-mpi-fortran-dev - Adaptable IO system for simulations - Fortran binding development
libadios2-serial-auxiliary-2 - ADIOS2 Adaptable IO system for simulations - auxiliary libraries
libadios2-serial-auxiliary-dev - Adaptable IO system for simulations - auxiliary development files
libadios2-serial-c++11-2 - ADIOS2 Adaptable IO system for simulations - C++11 binding librar
libadios2-serial-c++11-dev - Adaptable IO system for simulations - C++11 binding development f
libadios2-serial-c-2 - ADIOS2 Adaptable IO system for simulations - C binding libraries
libadios2-serial-c-dev - Adaptable IO system for simulations - C binding development files
libadios2-serial-core-2 - ADIOS2 Adaptable IO system for simulations - core libraries (seri
libadios2-serial-core-dev - Adaptable IO system for simulations - core development files (ser
libadios2-serial-fortran-2 - ADIOS2 Adaptable IO system for simulations - Fortran binding libr
libadios2-serial-fortran-dev - Adaptable IO system for simulations - Fortran binding development
python3-adios2 - ADIOS2 Adaptable IO system for simulations - Python bindings
python3-adios2-mpi - ADIOS2 Adaptable IO system for simulations - Python bindings (MPI
python3-adios2-serial - ADIOS2 Adaptable IO system for simulations - Python bindings (ser
Closes: 960339
Changes:
adios2 (2.8.2+dfsg1-1) unstable; urgency=medium
.
[ Kyle Edwards ]
* Initial release (Closes: #960339)
.
[ Drew Parsons ]
* Add debian/watch file.
* This build of adios2 includes "thirdparty" libraries developed by
the same authors (Georgia Tech Research Corporation) under the
same licence (BSD-3)
- atl 2.2.1
- dill 2.4.1
- EVPath 4.5.0
- ffs 1.6.0
- nlohmann_json_wrapper (but exclude actual nlohmann_json source)
- perfstubs [0.1]
- KWSys
Other thirdparty libraries are excluded in debian/copyright.
* add debian patches
- enet_pkgconfig.patch enables external enet to be
located using pkg-config (as supported by enet upstream,
rather than cmake config)
- testing_fortran_small.patch processes fortran SmallData library
before processing binding tests
Otherwise MPI tests don't have the small_data module available.
- fix_Werror_replacement.patch fixes testing CMakefiles, which
want to remove -Werror but leave any arguments to it hanging in place.
cf. upstream Issue#3775.
- plugin_path_test.patch installs plugin library
(libEncryptionOperator.so) in plugin directory and fixes plugin
path to test EncryptionOperator
- link_core_mpi.patch activates C and CXX always for MPI builds
even with MPI_Fortran. Needed since MPI support (core_mpi) needs
MPI::MPI_CXX even when used from Fortran.
- bp2h5_tool_install.patch installs bp2h5 with other binary tools
(adios2_tools-runtime component)
- thirdparty_soname.patch adds soversions to evpath (and cm*) and
perfstubs to make shared library packaging conform with policy
- ctest_lib_without_rpath.patch injects LD_LIBRARY_PATH for tests,
needed since RUNPATH is removed from configuration.
- cmake_config_flavor.patch records ADIOS2_LIBRARY_SUFFIX in
installed cmake config files (adios2-config-common.cmake) and
defines ADIOS2_LIBRARY_FLAVOR removing leading _underscore.
Set minimum cmake version to 3.12 (adios2-config.cmake) to use
REPLACE to define ADIOS2_LIBRARY_FLAVOR (needs 3.4, use 3.12 for
consistency with toplevel source)
- python_fix.patch fixes example python scripts to use int not
numpy.int, which is now dropped from numpy
* configure with cmake variable EVPATH_TRANSPORT_MODULES=OFF to
prevent generation of standalone evpath transport libraries
(cmselect etc)
* plugin libraries (libEncryptionOperator.so) are placed in
/usr/lib/*/adios2/{serial,mpi}/plugins
* adios2_scripts-runtime is installed into adios2-scripts,
depended on by the adios2*-bin packages
Scripts are installed from install-serial, since their
counterparts in install-mpi are identical
* Most header files are identical between serial and mpi builds.
Place common headers in libadios2-common-*-dev packages.
- mark Conflicts between libadios2-serial-core-dev and
libadios2-mpi-core-dev, since the same file
/usr/include/adios2/common/ADIOSConfig.h has different values of
ADIOS2_HAVE_MPI for serial (not defined) and mpi (defined).
- mark Conflicts: between libadios2-serial-fortran-dev and
libadios2-mpi-fortran-dev. The MPI build generates Fortran mod
files in /usr/include/adios2/fortran which differ (contain mpi
references) from the same file generated by the serial build.
- debian/tests runs serial and mpi test examples separately
* README.Debian installed by libadios2-serial-core-dev
libadios2-mpi-core-dev python3-adios2 explains the serial and MPI
builds, C C++ Fortran (and Python) packages, and location of the
standard plugin library at
/usr/lib/${DEB_HOST_MULTIARCH}/adios2/{serial,mpi}/plugins
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