Your message dated Sun, 22 Nov 2020 14:54:01 +0000 with message-id <E1kgqkb-0009EK-DJ@fasolo.debian.org> and subject line Bug#974834: fixed in gsort 0.1.4-1 has caused the Debian Bug report #974834, regarding ITP: gsort -- Sort genomic data to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner@bugs.debian.org immediately.) -- 974834: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=974834 Debian Bug Tracking System Contact owner@bugs.debian.org with problems
--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: gsort -- Sort genomic data
- From: Nilesh Patra <npatra974@gmail.com>
- Date: Sun, 15 Nov 2020 16:34:13 +0530
- Message-id: <[🔎] CAJN192_JoU5U0W7X5QtvyRLp+p+xMtyDt5oGVWuXhXwtUjco0Q@mail.gmail.com>
Package: wnpp Severity: wishlist Owner: Nilesh Patra <npatra974@gmail.com> X-Debbugs-CC: debian-devel@lists.debian.org * Package name : gsort Version : 0.1.4-1 Upstream Author : Brent Pedersen * URL : https://github.com/brentp/gsort * License : Expat Programming Lang: Golang Description : sort genomic data
gsort is a tool to sort genomic files according to a genomefile.
For example, to sort VCF to have order:
X, Y, 2, 1, 3, ... and the header needs to be kept at the top.
.
As a more likely example, if a file nneds to be sorted to match GATK
order (1 ... X, Y, MT) which is not possible with any other sorting
tool. With gsort one can simply place MT as the last chrom in the
".genome" file.
.
It will also be useful for getting files ready for use in bedtools. I shall maintain this package.
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--- Begin Message ---
- To: 974834-close@bugs.debian.org
- Subject: Bug#974834: fixed in gsort 0.1.4-1
- From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>
- Date: Sun, 22 Nov 2020 14:54:01 +0000
- Message-id: <E1kgqkb-0009EK-DJ@fasolo.debian.org>
- Reply-to: Nilesh Patra <npatra974@gmail.com>
Source: gsort Source-Version: 0.1.4-1 Done: Nilesh Patra <npatra974@gmail.com> We believe that the bug you reported is fixed in the latest version of gsort, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 974834@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nilesh Patra <npatra974@gmail.com> (supplier of updated gsort package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmaster@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 14 Nov 2020 03:57:11 +0530 Source: gsort Binary: golang-github-brentp-gsort-dev gsort Architecture: source all amd64 Version: 0.1.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Nilesh Patra <npatra974@gmail.com> Description: golang-github-brentp-gsort-dev - library package for gsort gsort - sort genomic data Closes: 974834 Changes: gsort (0.1.4-1) unstable; urgency=medium . * Initial release (Closes: #974834) - Reupload: Built-using removed in d/control Checksums-Sha1: b2e1d4f4510a2aebf58e221abe824ff02f9a3e67 2264 gsort_0.1.4-1.dsc a7ab0c85d9222b558120a46fb1dcc30924e26662 10483 gsort_0.1.4.orig.tar.gz c6e3472319524d05b63926e1f7c30aaad12b5f9f 4740 gsort_0.1.4-1.debian.tar.xz acb68522a230e2755e536b9994ece35a2435c684 8884 golang-github-brentp-gsort-dev_0.1.4-1_all.deb 6f029cd4735499f8f3806d14b2aa081f1545ee5b 7828 gsort_0.1.4-1_amd64.buildinfo 774ea18997ea4d387735ba0c4dd2043f0ba23827 1744836 gsort_0.1.4-1_amd64.deb Checksums-Sha256: e4a777696c5191c6b059f37c49ad2dbc73fe4a09e88bb32fcd400699a89e3a3a 2264 gsort_0.1.4-1.dsc 3a2218d992801b7e940b93a6c15e135400b04d2d75e1303b018e9db9ec7f5949 10483 gsort_0.1.4.orig.tar.gz 6b872c73958bc900f01625d15b02380cf6673bfe56ea0eebc22cec80156f7d9b 4740 gsort_0.1.4-1.debian.tar.xz ffd8ea039d1c8867b8abdc3ed74d544d8260b3efb503b3721359598a001417b0 8884 golang-github-brentp-gsort-dev_0.1.4-1_all.deb b75982acba7e6fd966627f3eab1e90be9980fcec480a93647ccdfb8ebdf0dd6c 7828 gsort_0.1.4-1_amd64.buildinfo 8b56fe5bd3fb589bfb80c9acf5f8482a94fb39401bffd2801ce5a2ec6fb483ce 1744836 gsort_0.1.4-1_amd64.deb Files: cb6493bc41e4d280c6979c7340b3167a 2264 science optional gsort_0.1.4-1.dsc 45107947c4a7bae1a73113e0512e432c 10483 science optional gsort_0.1.4.orig.tar.gz 9479d1a6da3d2e1c8c4d9aba7007d0e6 4740 science optional gsort_0.1.4-1.debian.tar.xz 17ae63589c567644b55e8b2a27dc5b05 8884 science optional golang-github-brentp-gsort-dev_0.1.4-1_all.deb b2be40a1470f60113b12a244ba1a46eb 7828 science optional gsort_0.1.4-1_amd64.buildinfo 0de992f6abaab8248bf07a82ed975ada 1744836 science optional gsort_0.1.4-1_amd64.deb -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl+6bQIACgkQL9i+2sAg 7tEh7g/+N6I/s5kcK/gT/77F8tg1qwSmZKCeUYBnt0Ce2zjSqEgfvKdocPHNox1Z +Rx/Rczfb0ixFYyO9B/upPQqrrt2ap2FQoXA7OU23GlJKjHp7D880N1mPcMc0FKd 6qeDs4K22lZ7z+cAobXrbO9kYz+DmCNB39ztr+jVjCO8jbWF5JAt9P3HUOl0aPU8 sByyd/n2gHW5pwqEoQLCjQcuap7gZG4DB4QYR8N9BRb+LiLy/6z/WqKtXk92bqfx IDJKYy2BzO5NBIS6poYlQ8EjgmBB3LTI3D628b26e4hXNh/xOCxjjEbWdgOBSx8k NbkoVGiFvzs0FhdwujJJof8D+MJvE2a5jMpc9AgqQMo7x95cPGdoNvzbFjY+SRaW eLXYVP1H3TZjsnGDkRqO9JfxyOEZ3jq6TT20PaBMfBqSVYM9UX6B5xfNrGAGeehn GDDsB99fUbvKxyvsvcc8m+GOBAHutgj06LIecLte3NCF6zeCkbmjGuyXQVRZ3abH mJ3GaHxvmW4jhudMcEdtFvJo05IfNZ8+kFU32u9jqMOP+XsSgGqNOO8cYRxakExf As0ony4ZKIg7/aJoME6hhtAgDbt31L2Bs2x3N6xUAxtz00DOVptRamSnLnl3SzU3 zfi7Mo3aGYYdWbHslEj7+1wvEzHOK4v1kJ6GGGixHRwh8flR29c= =MLUB -----END PGP SIGNATURE-----
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