Re: [Help] librostlab-blast fails its autopkgtest with C++ issue

[Andreas Tille <tille@debian.org>]

Hi Aaron,

Am Sun, Jan 23, 2022 at 12:10:05AM -0500 schrieb Aaron M. Ucko:
> Andreas Tille <andreas@an3as.eu> writes:
> 
> > Any idea how to fix
> [...]
> > [1] https://salsa.debian.org/med-team/librostlab-blast/-/jobs/2383360
> 
> Please try the attached patch, which eliminates the need to force an old
> C++ standard version (which this package can't expect callers to use) in
> debian/rules.

Thanks a lot for the patch which was definitely helpful to overcome the
said problem.  However, it is not solved yet[1]:

/usr/bin/ld: /tmp/ccv6wJk4.o: in function `main':
parseblast.cpp:(.text+0x7c): undefined reference to `rostlab::blast::parser_driver::parse(bool, bool)'
/usr/bin/ld: /tmp/ccv6wJk4.o: in function `rostlab::blast::parser_driver::parser_driver(_IO_FILE*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
parseblast.cpp:(.text._ZN7rostlab5blast13parser_driverC2EP8_IO_FILERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE[_ZN7rostlab5blast13parser_driverC5EP8_IO_FILERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE]+0x70): undefined reference to `rostlab::blast::parser_driver::_scan_init()'
/usr/bin/ld: /tmp/ccv6wJk4.o: in function `rostlab::blast::parser_driver::~parser_driver()':
parseblast.cpp:(.text._ZN7rostlab5blast13parser_driverD2Ev[_ZN7rostlab5blast13parser_driverD5Ev]+0x22): undefined reference to `rostlab::blast::parser_driver::_scan_destroy()'
collect2: error: ld returned 1 exit status

Kind regards

       Andreas.

[1] https://salsa.debian.org/med-team/librostlab-blast/-/jobs/2391994

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