Am 20.06.2021 um 21:32 schrieb Andreas Tille:
Hi Steffen, thanks for working on this package. On Sun, Jun 20, 2021 at 01:22:56PM +0200, Steffen Möller wrote:Peer review and (if not too bad) upload would be appreciated.dh_auto_build help2man ./mCaller.py --version-string=`head -n1 debian/changelog |cut -f1 -d- | cut -f2 -d'(' ` --no-info > debian/mCaller.1 help2man: can't get `--help' info from ./mCaller.py My guess is it works on your local machine and I'd like to repeat my plea to build in a chroot at least once before asking for review.
Right. I had only updated the build environment but not actually run it :o/ Sorry and thanks! I saw a bunch of nice changes by Nilesh, and was also happy when I saw that Nilesh had prepared the libmmmulti library last year, you did libflathashmap, so I gave seqwish another look. routine-update was busy with a version bump but somehow I did not take the first (should be easy) hurdle of a pthread link error. Another day. There is a submodule "gzip_reader" that we have not yet packaged, but I would like to see how far we get without it. These packages are from the "virus" tab. We truly need to finish some more columns. It does not help (or it does since this does not seem to have many dependencies) that by reading my notes to the right of that tab, I was pointed to https://github.com/ncbi/vadr. This seems very interesting and still timely to have, so I added it as one of our workflows. If I get this right then you use it to submit viral genome sequences and this tool tells you what they are and is special about them. I had a quick look at the documentation and this depends on the typical blast, hmmer and cmbuild (== infernal) tools - we have all that. Steffen