Help with new version of augur needed

[Andreas Tille <andreas@an3as.eu>]

Hi,

does anybody have some spare cycles for augur?  I updated the packaging[1] to
the latest upstream version but got something like

...
Error during alignment
----------------------------- Captured stderr call -----------------------------

ERROR: b''
shell exited 127 when running: mafft --add /tmp/pytest-of-pbuilder/pytest-0/test_run_check_alignment_not_d0/out.to_align.fasta --keeplength --reorder --anysymbol --nomemsave --adjustdirection
Are you sure this program is installed?

=============================== warnings summary ===============================
/usr/lib/python3/dist-packages/Bio/Alphabet/__init__.py:22
  /usr/lib/python3/dist-packages/Bio/Alphabet/__init__.py:22: PendingDeprecationWarning: We intend to remove or replace Bio.Alphabet in 2020, ideally avoid using it explicitly in your code. P
    warnings.warn(

/usr/lib/python3/dist-packages/treetime/distribution.py:4
  /usr/lib/python3/dist-packages/treetime/distribution.py:4: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.
    from collections import Iterable

-- Docs: https://docs.pytest.org/en/latest/warnings.html
============== 12 failed, 179 passed, 2 warnings in 4.30 seconds ===============
E: pybuild pybuild:352: test: plugin distutils failed with: exit code=1: cd /build/augur-10.0.2/.pybuild/cpython3_3.8/build; python3.8 -m pytest tests
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.8 returned exit code 13


when trying to build.

Any help would be welcome

     Andreas.


[1] https://salsa.debian.org/med-team/augur

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