Bug#1040452: libc6: upgrading libc6 to version 2.37-3 break almost every program (especially in a shell)

To: Aurelien Jarno <aurelien@aurel32.net>, 1040452@bugs.debian.org
Subject: Bug#1040452: libc6: upgrading libc6 to version 2.37-3 break almost every program (especially in a shell)
From: matteo <matteo.ghetta@gmail.com>
Date: Fri, 7 Jul 2023 08:55:05 +0200
Message-id: <[🔎] b2448983-e4c0-77fc-26d6-5f3817e1668f@gmail.com>
Reply-to: matteo <matteo.ghetta@gmail.com>, 1040452@bugs.debian.org
In-reply-to: <[🔎] ZKe0cjhZPdskBdGT@aurel32.net>
References: <[🔎] 3d1fce41-5c61-79ed-6341-bffc9e5f4b05@heise.de> <handler.1040452.B.1688621558542050.ack@bugs.debian.org> <[🔎] d1ee773e-c242-ad8f-8cad-9624460ada11@heise.de> <[🔎] 3d1fce41-5c61-79ed-6341-bffc9e5f4b05@heise.de> <[🔎] 0c2d3439-9d9a-432d-5fe2-e1c44ec0628b@heise.de> <ZKcZZNsgj0/M9csM@aurel32.net> <ZKcZZNsgj0/M9csM@aurel32.net> <[🔎] 3d1fce41-5c61-79ed-6341-bffc9e5f4b05@heise.de> <[🔎] 26f82ad4-5ae0-65db-16bf-10e3e3a91c6a@gmail.com> <[🔎] ZKe0cjhZPdskBdGT@aurel32.net> <[🔎] 3d1fce41-5c61-79ed-6341-bffc9e5f4b05@heise.de>

Hi,

here it is:


Log started: 2023-07-06  15:18:56
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[K[1;1H[?25l[?12l[?25h[37mPackageconfiguration[16;2H[30m[47m┌─────────────────────────────────────────────────────────────────────────────────────────┤[31mConfiguring libc6:amd64[30m├──────────────────────────────────────────────────────────────────────────────────────────┐[17;2H│Running services and programs that are using NSS need to be restarted,otherwise they might not be able to do lookup or authentication any more(for services such as ssh, this can affect your ability to │[97m[40m[18;2H[30m[47m│ login). Please review the following space-separatedlist of init.d scripts for services to be restarted now, and correct itif needed.│[97m[40m [19;2H[30m[47m│

│[97m[40m [20;2H[30m[47m│ Note:restarting sshd/telnetd should not affect any existing connections.│[97m[40m[21;2H[30m[47m│

│[97m[40m [22;2H[30m[47m│ Services to restart for GNU libclibrary upgrade:│[97m[40m [23;2H[30m[47m│

│[97m[40m[24;2H[30m[47m│ [37m[44mpostgresql exim4 cupscron__________________________________________________________________________________________________________________________________________________________________________________[30m[47m│[97m[40m [25;2H[30m[47m│

│[97m[40m [26;2H[30m[47m│<Ok>│[97m[40m [27;2H[30m[47m│

│[97m[40m[28;2H[30m[47m└──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘[97m[40m[29;3H


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Restarting services possibly affected by the upgrade:
  postgresql: restarting...done.
  exim4: restarting...done.
  cups: restarting...done.
  cron: restarting...done.

Services restarted successfully.
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Preparing to unpack .../227-r-cran-fontliberation_0.1.0+dfsg-5_all.deb ...
Unpacking r-cran-fontliberation (0.1.0+dfsg-5) over (0.1.0+dfsg-4) ...
Preparing to unpack .../228-r-cran-fontquiver_0.2.1-4_all.deb ...
Unpacking r-cran-fontquiver (0.2.1-4) over (0.2.1-3) ...
Selecting previously unselected package r-cran-formatr.
Preparing to unpack .../229-r-cran-formatr_1.14-1_all.deb ...
Unpacking r-cran-formatr (1.14-1) ...
Preparing to unpack .../230-r-cran-ggplot2_3.4.2+dfsg-1_all.deb ...
Unpacking r-cran-ggplot2 (3.4.2+dfsg-1) over (3.4.1+dfsg-1) ...
Selecting previously unselected package r-cran-gridsvg.
Preparing to unpack .../231-r-cran-gridsvg_1.7-5-1_all.deb ...
Unpacking r-cran-gridsvg (1.7-5-1) ...
Preparing to unpack .../232-r-cran-igraph_1.5.0-1_amd64.deb ...
Unpacking r-cran-igraph (1.5.0-1) over (1.4.1-1) ...
Preparing to unpack .../233-r-cran-knitr_1.43+dfsg-1_all.deb ...
Unpacking r-cran-knitr (1.43+dfsg-1) over (1.42+dfsg-1) ...
Preparing to unpack .../234-r-cran-pbapply_1.7-2-1_all.deb ...
Unpacking r-cran-pbapply (1.7-2-1) over (1.7-0-1) ...
Preparing to unpack .../235-r-cran-pkgbuild_1.4.2-1_all.deb ...
Unpacking r-cran-pkgbuild (1.4.2-1) over (1.4.1-1) ...
Preparing to unpack .../236-r-cran-polspline_1.1.23-1_amd64.deb ...
Unpacking r-cran-polspline (1.1.23-1) over (1.1.22-1) ...
Preparing to unpack .../237-r-cran-proc_1.18.2-1_amd64.deb ...
Unpacking r-cran-proc (1.18.2-1) over (1.18.0-1+b1) ...
Preparing to unpack .../238-r-cran-s2_1.1.4-1_amd64.deb ...
Unpacking r-cran-s2 (1.1.4-1) over (1.1.2-1) ...
Preparing to unpack .../239-r-cran-svglite_2.1.1-2_amd64.deb ...
Unpacking r-cran-svglite (2.1.1-2) over (2.1.1-1) ...
Preparing to unpack .../240-r-cran-tikzdevice_0.12.4-2_amd64.deb ...
Unpacking r-cran-tikzdevice (0.12.4-2) over (0.12.4-1) ...
Preparing to unpack .../241-r-cran-tinytex_0.45-1_all.deb ...
Unpacking r-cran-tinytex (0.45-1) over (0.44-1) ...
Preparing to unpack .../242-r-cran-truncnorm_1.0-9-2_amd64.deb ...
Unpacking r-cran-truncnorm (1.0-9-2) over (1.0-9-1) ...
Preparing to unpack .../243-r-cran-vdiffr_1.0.5-2_amd64.deb ...
Unpacking r-cran-vdiffr (1.0.5-2) over (1.0.5-1) ...
Selecting previously unselected package r-cran-webshot.
Preparing to unpack .../244-r-cran-webshot_0.5.5-1_all.deb ...
Unpacking r-cran-webshot (0.5.5-1) ...
Preparing to unpack .../245-r-doc-html_4.3.1-2_all.deb ...
Unpacking r-doc-html (4.3.1-2) over (4.3.1-1) ...
Preparing to unpack .../246-saga_9.0.3+dfsg-1_amd64.deb ...
Unpacking saga (9.0.3+dfsg-1) over (9.0.2+dfsg-1+b1) ...
Preparing to unpack .../247-saga-common_9.0.3+dfsg-1_all.deb ...
Unpacking saga-common (9.0.3+dfsg-1) over (9.0.2+dfsg-1) ...
Preparing to unpack .../248-shotwell_0.32.1-1+b1_amd64.deb ...
Unpacking shotwell (0.32.1-1+b1) over (0.32.1-1) ...
Preparing to unpack .../249-xterm_383-1_amd64.deb ...
Unpacking xterm (383-1) over (382-2) ...
Setting up libksba8:amd64 (1.6.4-2) ...
Setting up libpipewire-0.3-common (0.3.72-2) ...
Setting up postgresql-client-common (252) ...
Setting up linux-image-6.3.0-2-amd64 (6.3.11-1) ...
I: /vmlinuz.old is now a symlink to boot/vmlinuz-6.3.0-1-amd64
I: /initrd.img.old is now a symlink to boot/initrd.img-6.3.0-1-amd64
I: /vmlinuz is now a symlink to boot/vmlinuz-6.3.0-2-amd64
I: /initrd.img is now a symlink to boot/initrd.img-6.3.0-2-amd64
/etc/kernel/postinst.d/dkms:
dkms: running auto installation service for kernel 6.3.0-2-amd64.
Sign command: /usr/lib/linux-kbuild-6.3/scripts/sign-file
Signing key: /var/lib/dkms/mok.key
Public certificate (MOK): /var/lib/dkms/mok.pub

Building module:
Cleaning build area...

make -j8 KERNELRELEASE=6.3.0-2-amd64 -C /lib/modules/6.3.0-2-amd64/buildM=/var/lib/dkms/virtualbox/7.0.8/build.....

Signing module /var/lib/dkms/virtualbox/7.0.8/build/vboxdrv/vboxdrv.ko
Signing module /var/lib/dkms/virtualbox/7.0.8/build/vboxnetadp/vboxnetadp.ko
Signing module /var/lib/dkms/virtualbox/7.0.8/build/vboxnetflt/vboxnetflt.ko
Cleaning build area...

vboxdrv.ko:
Running module version sanity check.
 - Original module
   - No original module exists within this kernel
 - Installation
   - Installing to /lib/modules/6.3.0-2-amd64/updates/dkms/

vboxnetadp.ko:
Running module version sanity check.
 - Original module
   - No original module exists within this kernel
 - Installation
   - Installing to /lib/modules/6.3.0-2-amd64/updates/dkms/

vboxnetflt.ko:
Running module version sanity check.
 - Original module
   - No original module exists within this kernel
 - Installation
   - Installing to /lib/modules/6.3.0-2-amd64/updates/dkms/
depmod...
dkms autoinstall on 6.3.0-2-amd64/x86_64 succeeded for virtualbox
dkms: autoinstall for kernel: 6.3.0-2-amd64.
/etc/kernel/postinst.d/initramfs-tools:
update-initramfs: Generating /boot/initrd.img-6.3.0-2-amd64

W: Possible missing firmware /lib/firmware/i915/skl_huc_2.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/bxt_huc_2.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/kbl_huc_4.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/glk_huc_4.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/kbl_huc_4.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/kbl_huc_4.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/cml_huc_4.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/icl_huc_9.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/ehl_huc_9.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/ehl_huc_9.0.0.bin formodule i915W: Possible missing firmware /lib/firmware/i915/tgl_huc_7.9.3.bin formodule i915W: Possible missing firmware /lib/firmware/i915/tgl_huc_7.9.3.bin formodule i915

W: Possible missing firmware /lib/firmware/i915/dg1_huc.bin for module i915

W: Possible missing firmware /lib/firmware/i915/tgl_huc_7.9.3.bin formodule i915

W: Possible missing firmware /lib/firmware/i915/tgl_huc.bin for module i915

W: Possible missing firmware /lib/firmware/i915/tgl_huc_7.9.3.bin formodule i915

W: Possible missing firmware /lib/firmware/i915/tgl_huc.bin for module i915

W: Possible missing firmware /lib/firmware/i915/dg2_huc_gsc.bin formodule i915W: Possible missing firmware /lib/firmware/i915/skl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/bxt_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/kbl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/glk_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/kbl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/kbl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/cml_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/icl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/ehl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/ehl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/tgl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/tgl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/dg1_guc_70.bin formodule i915W: Possible missing firmware /lib/firmware/i915/tgl_guc_69.0.3.bin formodule i915W: Possible missing firmware /lib/firmware/i915/tgl_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/tgl_guc_70.bin formodule i915W: Possible missing firmware /lib/firmware/i915/adlp_guc_69.0.3.bin formodule i915W: Possible missing firmware /lib/firmware/i915/adlp_guc_70.1.1.bin formodule i915W: Possible missing firmware /lib/firmware/i915/adlp_guc_70.bin formodule i915W: Possible missing firmware /lib/firmware/i915/dg2_guc_70.bin formodule i915W: Possible missing firmware /lib/firmware/i915/bxt_dmc_ver1_07.bin formodule i915W: Possible missing firmware /lib/firmware/i915/skl_dmc_ver1_27.bin formodule i915W: Possible missing firmware /lib/firmware/i915/kbl_dmc_ver1_04.bin formodule i915W: Possible missing firmware /lib/firmware/i915/glk_dmc_ver1_04.bin formodule i915W: Possible missing firmware /lib/firmware/i915/icl_dmc_ver1_09.bin formodule i915W: Possible missing firmware /lib/firmware/i915/tgl_dmc_ver2_12.bin formodule i915W: Possible missing firmware /lib/firmware/i915/rkl_dmc_ver2_03.bin formodule i915W: Possible missing firmware /lib/firmware/i915/dg1_dmc_ver2_02.bin formodule i915W: Possible missing firmware /lib/firmware/i915/adls_dmc_ver2_01.bin formodule i915W: Possible missing firmware /lib/firmware/i915/adlp_dmc_ver2_16.bin formodule i915

W: Possible missing firmware /lib/firmware/i915/adlp_dmc.bin for module i915

W: Possible missing firmware /lib/firmware/i915/dg2_dmc_ver2_08.bin formodule i915

/etc/kernel/postinst.d/zz-update-grub:
Generating grub configuration file ...
Found background image: /usr/share/images/desktop-base/desktop-grub.png
Found linux image: /boot/vmlinuz-6.3.0-2-amd64
Found initrd image: /boot/initrd.img-6.3.0-2-amd64
Found linux image: /boot/vmlinuz-6.3.0-1-amd64
Found initrd image: /boot/initrd.img-6.3.0-1-amd64
Found linux image: /boot/vmlinuz-6.0.0-5-amd64
Found initrd image: /boot/initrd.img-6.0.0-5-amd64
Found linux image: /boot/vmlinuz-6.0.0-1-amd64
Found initrd image: /boot/initrd.img-6.0.0-1-amd64
Found linux image: /boot/vmlinuz-5.16.0-3-amd64
Found initrd image: /boot/initrd.img-5.16.0-3-amd64
Found linux image: /boot/vmlinuz-5.16.0-1-amd64
Found initrd image: /boot/initrd.img-5.16.0-1-amd64
Found linux image: /boot/vmlinuz-5.9.0-4-amd64
Found initrd image: /boot/initrd.img-5.9.0-4-amd64
Warning: os-prober will not be executed to detect other bootable partitions.
Systems on them will not be added to the GRUB boot configuration.
Check GRUB_DISABLE_OS_PROBER documentation entry.
Adding boot menu entry for UEFI Firmware Settings ...
done
Setting up needrestart (3.6-5) ...
Setting up systemd-sysv (253.5-1) ...
Setting up python3-setuptools-whl (68.0.0-1) ...
Setting up libc-l10n (2.37-3) ...
Setting up libpython3-dev:amd64 (3.11.4-5) ...
Setting up hugo (0.113.0-1) ...
Setting up python3-renderpm:amd64 (4.0.4-6) ...
Setting up r-doc-html (4.3.1-2) ...
Setting up libdebuginfod-common (0.189-4) ...
Setting up qtbase5-doc (5.15.8+dfsg-13) ...
Setting up firmware-iwlwifi (20230515-3) ...
Setting up libgbm1:amd64 (23.1.3-1) ...
Setting up anacron (2.3-37) ...
anacron.service is a disabled or a static unit not running, not starting it.
anacron.timer is a disabled or a static unit not running, not starting it.
Setting up libtasn1-doc (4.19.0-3) ...
Setting up libtexluajit2:amd64 (2022.20220321.62855-7) ...
Setting up linux-headers-6.3.0-2-common (6.3.11-1) ...
Setting up libheif1:amd64 (1.16.2-1+b1) ...
Setting up binutils-common:amd64 (2.40.90.20230705-1) ...
Setting up libyajl2:amd64 (2.1.0-3.1) ...
Setting up php-symfony-dependency-injection (5.4.25+dfsg-1) ...
Setting up linux-libc-dev:amd64 (6.3.11-1) ...
Setting up libctf-nobfd0:amd64 (2.40.90.20230705-1) ...
Setting up libconfig++9v5:amd64 (1.5-0.4) ...
Setting up libnss-systemd:amd64 (253.5-1) ...
Setting up libheif-dev:amd64 (1.16.2-1+b1) ...
Setting up libnlopt0:amd64 (2.7.1-5+b1) ...
Setting up libobjc4:amd64 (13.1.0-7) ...
Setting up libnss3:amd64 (2:3.91-1) ...
Setting up libigdgmm12:amd64 (22.3.7+ds1-1) ...
Setting up linux-image-amd64 (6.3.11-1) ...
Setting up libgomp1:amd64 (13.1.0-7) ...
Setting up locales (2.37-3) ...
Installing new version of config file /etc/locale.alias ...
Generating locales (this might take a while)...
  en_US.UTF-8...
  it_IT.UTF-8...
Generation complete.
Setting up libwbclient0:amd64 (2:4.18.4+dfsg-1) ...
Setting up librav1e0:amd64 (0.6.6-2) ...
Setting up xxd (2:9.0.1672-1) ...
Setting up libsframe1:amd64 (2.40.90.20230705-1) ...
Setting up libxatracker2:amd64 (23.1.3-1) ...
Setting up libc6-dbg:amd64 (2.37-3) ...
Setting up libegl1-mesa:amd64 (23.1.3-1) ...
Setting up gcc-12-base:amd64 (12.3.0-5) ...
Setting up tzdata (2023c-7) ...

Current default time zone: 'Europe/Rome'
Local time is now:      Thu Jul  6 15:21:37 CEST 2023.
Universal Time is now:  Thu Jul  6 13:21:37 UTC 2023.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up evolution-common (3.48.4-1) ...
Setting up libsrt1.5-openssl:amd64 (1.5.2-1) ...
Setting up p11-kit-modules:amd64 (0.25.0-2) ...
Setting up gcc-10-base:amd64 (10.4.0-9) ...
Setting up libflac12:amd64 (1.4.3+ds-2) ...
Setting up libxml++2.6-2v5:amd64 (2.40.1-3) ...
Setting up vim-common (2:9.0.1672-1) ...
Setting up qt5-qmake-bin (5.15.8+dfsg-13) ...
Setting up libspa-0.2-modules:amd64 (0.3.72-2) ...
Setting up libpython3-all-dev:amd64 (3.11.4-5) ...
Setting up firmware-realtek (20230515-3) ...
Setting up libpipewire-0.3-0:amd64 (0.3.72-2) ...
Setting up libquadmath0:amd64 (13.1.0-7) ...
Setting up python3-reportlab-accel:amd64 (4.0.4-6) ...
Setting up r-base-core (4.3.1-2) ...
Installing new version of config file /etc/R/Makeconf ...
Setting up libtexlua53-5:amd64 (2022.20220321.62855-7) ...
Setting up intel-media-va-driver:amd64 (23.2.3+dfsg1-1) ...
Setting up php-symfony-filesystem (5.4.25+dfsg-1) ...
Setting up postgresql-common (252) ...
Merging postmaster.1.gz alternatives into psql.1.gz link group ...

update-alternatives: warning: forcing reinstallation of alternative/usr/share/postgresql/13/man/man1/psql.1.gz because link group psql.1.gzis broken

Setting up systemd-timesyncd (253.5-1) ...
Setting up libatomic1:amd64 (13.1.0-7) ...
Setting up udev (253.5-1) ...
Setting up libnss-myhostname:amd64 (253.5-1) ...
Setting up libjsoncpp25:amd64 (1.9.5-5) ...
Setting up libudev-dev:amd64 (253.5-1) ...
Setting up r-cran-svglite (2.1.1-2) ...
Setting up libsaga-api9:amd64 (9.0.3+dfsg-1) ...
Setting up r-cran-vdiffr (1.0.5-2) ...
Setting up libqt5core5a:amd64 (5.15.8+dfsg-13) ...
Setting up libglapi-mesa:amd64 (23.1.3-1) ...
Setting up libkpathsea6:amd64 (2022.20220321.62855-7) ...
Setting up libgfortran5:amd64 (13.1.0-7) ...
Setting up libmozjs-102-0:amd64 (102.13.0-1) ...
Setting up libvlccore9:amd64 (3.0.18-3) ...
Setting up r-cran-tinytex (0.45-1) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up r-cran-pbapply (1.7-2-1) ...
Setting up r-cran-polspline (1.1.23-1) ...
Setting up openjdk-17-jre-headless:amd64 (17.0.8~6-3) ...

update-binfmts: warning: current package is openjdk-18, but binaryformat already installed by openjdk-11

Setting up r-cran-knitr (1.43+dfsg-1) ...
Setting up php-symfony-config (5.4.25+dfsg-1) ...
Setting up libubsan1:amd64 (13.1.0-7) ...
Setting up libavtp0:amd64 (0.2.0-1+b1) ...
Setting up libsigc++-3.0-0:amd64 (3.4.0-7) ...
Setting up libprotobuf32:amd64 (3.21.12-6) ...
Setting up libsrt1.5-gnutls:amd64 (1.5.2-1) ...
Setting up r-cran-pkgbuild (1.4.2-1) ...
Setting up nmap-common (7.94+dfsg1-2) ...
Setting up libqt5dbus5:amd64 (5.15.8+dfsg-13) ...
Setting up calibre-bin (6.22.0-1) ...
Setting up r-cran-tikzdevice (0.12.4-2) ...
Setting up libasan8:amd64 (13.1.0-7) ...
Setting up libspa-0.2-bluetooth:amd64 (0.3.72-2) ...
Setting up libgl1-mesa-dev:amd64 (23.1.3-1) ...
Setting up libgegl-common (1:0.4.46-1) ...
Setting up libgeoip1:amd64 (1.6.12-11) ...
Setting up libpam-systemd:amd64 (253.5-1) ...
Setting up libc6-i386 (2.37-3) ...
Setting up libprotobuf-lite32:amd64 (3.21.12-6) ...
Setting up libopenal-data (1:1.23.1-3) ...
Setting up libcamel-1.2-64:amd64 (3.48.4-1) ...
Setting up xterm (383-1) ...
Setting up php-symfony-yaml (5.4.25+dfsg-1) ...
Setting up php-symfony-var-exporter (5.4.25+dfsg-1) ...
Setting up libtsan2:amd64 (13.1.0-7) ...
Setting up p11-kit (0.25.0-2) ...
Setting up libraw23:amd64 (0.21.1-4) ...
Setting up locate (4.9.0-5) ...
Setting up libbinutils:amd64 (2.40.90.20230705-1) ...
Setting up lsb-release (12.0-2) ...
Setting up geoip-database (20230704-1) ...
Setting up libc-dev-bin (2.37-3) ...
Setting up gir1.2-camel-1.2:amd64 (3.48.4-1) ...
Setting up libqt5test5:amd64 (5.15.8+dfsg-13) ...
Setting up libldb2:amd64 (2:2.7.2+samba4.18.4+dfsg-1) ...
Setting up libtasn1-6-dev:amd64 (4.19.0-3) ...
Setting up evolution-data-server-common (3.48.4-1) ...
Setting up libheif-plugin-dav1d:amd64 (1.16.2-1+b1) ...
Setting up libelf1:amd64 (0.189-4) ...
Setting up libgegl-0.4-0:amd64 (1:0.4.46-1+b1) ...
Setting up libqt5concurrent5:amd64 (5.15.8+dfsg-13) ...
Setting up libopenmpt0:amd64 (0.7.2-1) ...
Setting up vlc-data (3.0.18-3) ...
Setting up libcc1-0:amd64 (13.1.0-7) ...
Setting up libnss3-tools (2:3.91-1) ...
Setting up liblsan0:amd64 (13.1.0-7) ...
Setting up r-recommended (4.3.1-2) ...
Setting up libp11-kit-dev:amd64 (0.25.0-2) ...
Setting up cpp-10 (10.4.0-9) ...
Setting up libitm1:amd64 (13.1.0-7) ...
Setting up libsynctex2:amd64 (2022.20220321.62855-7) ...
Setting up libpython3-stdlib:amd64 (3.11.4-5) ...
Setting up libc-devtools (2.37-3) ...
Setting up gcc-9-base:amd64 (9.5.0-3+b1) ...
Setting up libheif-plugin-aomdec:amd64 (1.16.2-1+b1) ...
Setting up vlc-plugin-video-output:amd64 (3.0.18-3) ...
Setting up saga-common (9.0.3+dfsg-1) ...
Setting up ncurses-term (6.4+20230625-1) ...
Setting up libprotoc32:amd64 (3.21.12-6) ...
Setting up libctf0:amd64 (2.40.90.20230705-1) ...
Setting up libheif-plugin-libde265:amd64 (1.16.2-1+b1) ...
Setting up mesa-vulkan-drivers:amd64 (23.1.3-1) ...
Setting up mesa-vdpau-drivers:amd64 (23.1.3-1) ...
Setting up libdw1:amd64 (0.189-4) ...
Setting up r-cran-webshot (0.5.5-1) ...
Setting up cpp-12 (12.3.0-5) ...
Setting up r-base-dev (4.3.1-2) ...
Setting up libffado2:amd64 (2.4.7-1) ...
Setting up qt5-qmake:amd64 (5.15.8+dfsg-13) ...
Setting up protobuf-compiler (3.21.12-6) ...
Setting up firefox (115.0-1) ...
Setting up libwireplumber-0.4-0:amd64 (0.4.14-3) ...
Setting up libheif-plugin-x265:amd64 (1.16.2-1+b1) ...
Setting up r-cran-ggplot2 (3.4.2+dfsg-1) ...
Setting up iproute2 (6.4.0-1) ...
Setting up libheif-plugin-aomenc:amd64 (1.16.2-1+b1) ...
Setting up r-cran-truncnorm (1.0-9-2) ...
Setting up r-cran-fontliberation (0.1.0+dfsg-5) ...
Setting up r-cran-s2 (1.1.4-1) ...
Setting up libgcc-10-dev:amd64 (10.4.0-9) ...
Setting up libdebuginfod1:amd64 (0.189-4) ...
Setting up openjdk-11-jre-headless:amd64 (11.0.20~7-1) ...

Installing new version of config file/etc/java-11-openjdk/security/java.policy ...update-binfmts: warning: current package is openjdk-18, but binaryformat already installed by openjdk-11

Setting up libgl1-mesa-dri:amd64 (23.1.3-1) ...
Setting up libraptor2-0:amd64 (2.0.16-2) ...
Setting up r-cran-gridsvg (1.7-5-1) ...
Setting up r-cran-proc (1.18.2-1) ...
Setting up libsaga-gdi9:amd64 (9.0.3+dfsg-1) ...
Setting up libvlc5:amd64 (3.0.18-3) ...
Setting up samba-libs:amd64 (2:4.18.4+dfsg-1) ...
Setting up r-cran-cairo (1.6-0-2) ...
Setting up r-cran-igraph (1.5.0-1) ...
Setting up python3 (3.11.4-5) ...
running python rtupdate hooks for python3.11...
running python post-rtupdate hooks for python3.11...
Setting up libopenal1:amd64 (1:1.23.1-3) ...
Setting up vim-tiny (2:9.0.1672-1) ...
Setting up nmap (7.94+dfsg1-2) ...
Setting up libqt5network5:amd64 (5.15.8+dfsg-13) ...
Setting up python3-cloudpickle (2.2.1-1) ...
Setting up python3-comm (0.1.2-3) ...
Setting up libprotobuf-dev:amd64 (3.21.12-6) ...
Setting up libqt5sql5:amd64 (5.15.8+dfsg-13) ...
Setting up libpipewire-0.3-modules:amd64 (0.3.72-2) ...
Setting up libcairomm-1.16-1:amd64 (1.16.2-7) ...
Setting up python3-pil:amd64 (10.0.0-1) ...
Setting up qtbase5-dev-tools (5.15.8+dfsg-13) ...
Setting up libasan5:amd64 (9.5.0-3+b1) ...
Setting up libqt5xml5:amd64 (5.15.8+dfsg-13) ...
Setting up libgprofng0:amd64 (2.40.90.20230705-1) ...
Setting up libegl-mesa0:amd64 (23.1.3-1) ...
Setting up libptexenc1:amd64 (2022.20220321.62855-7) ...
Setting up r-base-html (4.3.1-2) ...
Setting up python3-venv (3.11.4-5) ...
Setting up r-base (4.3.1-2) ...
Setting up python3-pyparsing (3.1.0-1) ...
Setting up python3-pil.imagetk:amd64 (10.0.0-1) ...
Setting up lib32gcc-s1 (13.1.0-7) ...
Setting up lib32stdc++6 (13.1.0-7) ...
Setting up python3-dev (3.11.4-5) ...
Setting up libgcc-12-dev:amd64 (12.3.0-5) ...
Setting up python3-fiona (1.9.4-2) ...
Setting up python3-ipykernel (6.23.3-1) ...
Setting up php-symfony-cache (5.4.25+dfsg-1) ...
Setting up php-symfony-expression-language (5.4.25+dfsg-1) ...
Setting up python3-psycopg2 (2.9.6-2) ...
Setting up python3-plotly (5.15.0+dfsg1-1) ...
Setting up libsmbclient:amd64 (2:4.18.4+dfsg-1) ...
Setting up python3-reportlab (4.0.4-6) ...
Setting up libobjc-12-dev:amd64 (12.3.0-5) ...
Setting up linux-kbuild-6.3 (6.3.11-1) ...
Setting up texlive-binaries (2022.20220321.62855-7) ...
Setting up libvlc-bin:amd64 (3.0.18-3) ...
Setting up python3-exceptiongroup (1.1.2-1) ...
Setting up cpp-9 (9.5.0-3+b1) ...
Setting up libc6-dev:amd64 (2.37-3) ...
Setting up libgfortran-10-dev:amd64 (10.4.0-9) ...
Setting up vlc-plugin-base:amd64 (3.0.18-3) ...
Setting up mesa-va-drivers:amd64 (23.1.3-1) ...
Setting up python3-protobuf (3.21.12-6) ...
Setting up saga (9.0.3+dfsg-1) ...
Setting up python3-pathspec (0.11.1-1) ...
Setting up libgstreamer1.0-0:amd64 (1.22.4-1) ...
Setcap worked! gst-ptp-helper is not suid!
Setting up binutils-x86-64-linux-gnu (2.40.90.20230705-1) ...
Setting up python3-pkg-resources (68.0.0-1) ...
Setting up python3-prompt-toolkit (3.0.39-1) ...
Setting up r-cran-fontquiver (0.2.1-4) ...
Setting up gir1.2-gstreamer-1.0:amd64 (1.22.4-1) ...
Setting up shotwell (0.32.1-1+b1) ...
Setting up libstdc++-10-dev:amd64 (10.4.0-9) ...
Setting up libglx-mesa0:amd64 (23.1.3-1) ...
Setting up python3-cairo:amd64 (1.24.0-1) ...
Setting up libqt5sql5-sqlite:amd64 (5.15.8+dfsg-13) ...
Setting up python3-setuptools (68.0.0-1) ...
Setting up python3-spyder-kernels (2.4.4-2) ...
Setting up libstdc++-12-dev:amd64 (12.3.0-5) ...
Setting up python3-zeroconf (0.70.0-1) ...
Setting up python3-pytest (7.4.0-2) ...
Setting up python3-pylint-venv (3.0.2-1) ...
Setting up libqt5gui5:amd64 (5.15.8+dfsg-13) ...
Setting up vlc-bin (3.0.18-3) ...
Setting up python3-all (3.11.4-5) ...
Setting up libqt5widgets5:amd64 (5.15.8+dfsg-13) ...
Setting up libgfortran-12-dev:amd64 (12.3.0-5) ...
Setting up binutils (2.40.90.20230705-1) ...
Setting up qt5-gtk-platformtheme:amd64 (5.15.8+dfsg-13) ...
Setting up pipewire-bin (0.3.72-2) ...
Setting up python3-qtconsole (5.4.3-2) ...
Setting up libgcc-9-dev:amd64 (9.5.0-3+b1) ...
Setting up libqt5printsupport5:amd64 (5.15.8+dfsg-13) ...
Setting up libgstreamer-plugins-bad1.0-0:amd64 (1.22.4-1) ...
Setting up python3-pylsp (1.7.4-1) ...
Setting up python3-rope (1.9.0-1) ...
Setting up gcc-12 (12.3.0-5) ...
Setting up gstreamer1.0-plugins-bad:amd64 (1.22.4-1) ...
Setting up gir1.2-gst-plugins-bad-1.0:amd64 (1.22.4-1) ...
Setting up calibre (6.22.0-1) ...
Setting up gcc-10 (10.4.0-9) ...
Setting up qtbase5-dev:amd64 (5.15.8+dfsg-13) ...
Setting up libgl1-mesa-glx:amd64 (23.1.3-1) ...
Setting up libqt5opengl5:amd64 (5.15.8+dfsg-13) ...
Setting up vlc-plugin-qt:amd64 (3.0.18-3) ...
Setting up gstreamer1.0-plugins-ugly:amd64 (1.22.4-1) ...
Setting up vlc (3.0.18-3) ...
Setting up pipewire:amd64 (0.3.72-2) ...
Setting up python3-gst-1.0 (1.22.4-1) ...
Setting up g++-12 (12.3.0-5) ...
Setting up python3-all-dev (3.11.4-5) ...
Setting up gcc-9 (9.5.0-3+b1) ...
Setting up qtbase5-private-dev:amd64 (5.15.8+dfsg-13) ...
Setting up g++-10 (10.4.0-9) ...
Setting up libstdc++-9-dev:amd64 (9.5.0-3+b1) ...
Setting up libqt5opengl5-dev:amd64 (5.15.8+dfsg-13) ...
Setting up vlc-plugin-skins2:amd64 (3.0.18-3) ...
Setting up libgfortran-9-dev:amd64 (9.5.0-3+b1) ...
Setting up gstreamer1.0-pipewire:amd64 (0.3.72-2) ...
Setting up linux-compiler-gcc-12-x86 (6.3.11-1) ...
Setting up gfortran-12 (12.3.0-5) ...
Setting up pipewire-alsa:amd64 (0.3.72-2) ...
Setting up gfortran-10 (10.4.0-9) ...
Setting up g++-9 (9.5.0-3+b1) ...
Setting up wireplumber (0.4.14-3) ...
Setting up linux-headers-6.3.0-2-amd64 (6.3.11-1) ...
/etc/kernel/header_postinst.d/dkms:
dkms: running auto installation service for kernel 6.3.0-2-amd64.
dkms: autoinstall for kernel: 6.3.0-2-amd64.
Setting up pipewire-pulse (0.3.72-2) ...
Setting up gfortran-9 (9.5.0-3+b1) ...
Setting up linux-headers-amd64 (6.3.11-1) ...
Setting up pipewire-audio (0.3.72-2) ...
Processing triggers for man-db (2.11.2-2) ...
Processing triggers for tex-common (6.18) ...
Running mktexlsr. This may take some time... done.

/usr/sbin/update-fmtutil: line 213: 93596 Segmentation fault find"$SNIPPET_BASE/$tree" -maxdepth 1 -type f -name '*'$EXT -exec cat '{}'\; >> "$tempfile"

[1mdpkg:[0m error processing package tex-common (--configure):

installed tex-common package post-installation script subprocessreturned error exit status 139

Processing triggers for dbus (1.14.8-1) ...
Processing triggers for shared-mime-info (2.2-1) ...
Processing triggers for ca-certificates-java (20230620) ...
done.
Processing triggers for install-info (6.8-6+b1) ...
Processing triggers for mailcap (3.70+nmu1) ...
Processing triggers for desktop-file-utils (0.26-1) ...
Processing triggers for initramfs-tools (0.142) ...
update-initramfs: Generating /boot/initrd.img-6.3.0-2-amd64
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
awk: cmd. line:3: fatal error: internal error: segfault
awk: cmd. line:3: fatal error: internal error: segfault
Segmentation fault
Segmentation fault
E: /usr/share/initramfs-tools/hooks/udev failed with return 139.
update-initramfs: failed for /boot/initrd.img-6.3.0-2-amd64 with 139.
[1mdpkg:[0m error processing package initramfs-tools (--configure):

installed initramfs-tools package post-installation script subprocessreturned error exit status 139

Processing triggers for hicolor-icon-theme (0.17-2) ...
Processing triggers for gnome-menus (3.36.0-1.1) ...
Processing triggers for libglib2.0-0:amd64 (2.74.6-2) ...
Setting up openjdk-17-jre:amd64 (17.0.8~6-3) ...
Processing triggers for libc-bin (2.37-3) ...
Processing triggers for ccache (4.8+really4.7.5-1) ...
Updating symlinks in /usr/lib/ccache ...
Setting up openjdk-11-jre:amd64 (11.0.20~7-1) ...
Setting up openjdk-17-jdk-headless:amd64 (17.0.8~6-3) ...
Setting up libedataserver-1.2-27:amd64 (3.48.4-1) ...
Setting up libecal-2.0-2:amd64 (3.48.4-1) ...
Setting up libedataserverui4-1.0-0:amd64 (3.48.4-1) ...
Setting up libebook-contacts-1.2-4:amd64 (3.48.4-1) ...
Setting up openjdk-17-jdk:amd64 (17.0.8~6-3) ...
Setting up gir1.2-edataserver-1.2:amd64 (3.48.4-1) ...
Setting up libedataserverui-1.2-4:amd64 (3.48.4-1) ...
Setting up libebackend-1.2-11:amd64 (3.48.4-1) ...
Setting up libedata-cal-2.0-2:amd64 (3.48.4-1) ...
Setting up gir1.2-ecal-2.0:amd64 (3.48.4-1) ...
Setting up libedata-book-1.2-27:amd64 (3.48.4-1) ...
Setting up libebook-1.2-21:amd64 (3.48.4-1) ...
Setting up libevolution (3.48.4-1) ...
Setting up evolution-data-server (3.48.4-1) ...
Setting up evolution (3.48.4-1) ...
Setting up evolution-plugins (3.48.4-1) ...
Setting up evolution-plugin-bogofilter (3.48.4-1) ...
Setting up evolution-plugin-pstimport (3.48.4-1) ...
Processing triggers for libvlc-bin:amd64 (3.0.18-3) ...
Segmentation fault
[1mdpkg:[0m error processing package libvlc-bin:amd64 (--configure):

installed libvlc-bin:amd64 package post-installation script subprocessreturned error exit status 139

Processing triggers for libc-bin (2.37-3) ...
Errors were encountered while processing:
 tex-common
 initramfs-tools
 libvlc-bin:amd64
Log ended: 2023-07-06  15:22:25

Cheers!

Matteo

On 7/7/23 08:45, Aurelien Jarno wrote:

Hi,

On 2023-07-07 07:00, matteo wrote:

Hi,

same here. I have the full log of apt upgrade:

... skipping the initial part without errors ...

Running mktexlsr. This may take some time... done.
/usr/sbin/update-fmtutil: line 213: 93596 Segmentation fault      find
"$SNIPPET_BASE/$tree" -maxdepth 1 -type f -name '*'$EXT -exec cat '{}' \; >>
"$tempfile"
dpkg: error processing package tex-common (--configure):
  installed tex-common package post-installation script subprocess returned
error exit status 139
Processing triggers for dbus (1.14.8-1) ...
Processing triggers for shared-mime-info (2.2-1) ...
Processing triggers for ca-certificates-java (20230620) ...
done.
Processing triggers for install-info (6.8-6+b1) ...
Processing triggers for mailcap (3.70+nmu1) ...
Processing triggers for desktop-file-utils (0.26-1) ...
Processing triggers for initramfs-tools (0.142) ...
update-initramfs: Generating /boot/initrd.img-6.3.0-2-amd64
Segmentation fault


Thanks for the log. Would it be possible to share the initial part
without errors? It seems the problem is not in the content of the
packages, but in the sequence of installation, so it would be useful to
know what got unpack and what didn't.

Just two random things to test to try to unbrick the system:
- Try running 'ldconfig'. As it seems that some postinst scripts have
   been able to run before things start to crash, it could be that it is
   not run properly.
- Try unsetting LC_ALL (and possibly LC_*) and LANGUAGES environment
   variables. Given the issue appears in the tolower function, it could
   be a problem with the locales.

Regards
Aurelien

Reply to:

References:
- Bug#1040452: libc6: upgrading libc6 to version 2.37-3 break almost every program (especially in a shell)
  - From: Kai Wasserbäch <kaw@heise.de>
- Bug#1040452: libc6: upgrading libc6 to version 2.37-3 break almost every program (especially in a shell)
  - From: Kai Wasserbäch <kaw@heise.de>
- Bug#1040452: libc6: upgrading libc6 to version 2.37-3 break almost every program (especially in a shell)
  - From: Kai Wasserbäch <kaw@heise.de>
- Bug#1040452: libc6: upgrading libc6 to version 2.37-3 break almost every program (especially in a shell)
  - From: Aurelien Jarno <aurelien@aurel32.net>
- Bug#1040452: libc6: upgrading libc6 to version 2.37-3 break almost every program (especially in a shell)
  - From: matteo <matteo.ghetta@gmail.com>
- Bug#1040452: libc6: upgrading libc6 to version 2.37-3 break almost every program (especially in a shell)
  - From: Aurelien Jarno <aurelien@aurel32.net>

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